View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16569_low_26 (Length: 477)
Name: NF16569_low_26
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_26 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 16 - 461
Target Start/End: Complemental strand, 2394333 - 2393888
Alignment:
| Q |
16 |
atagtaaaaattacacgagtttcacatagtaaaataataaatgttnnnnnnntgcgtatcgttaacgttccctctggatagtcttgttgaacacgcatca |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2394333 |
atagtaaaaattacacgagtttcacgtagtaaaataataaatgttaaaaaaatgcgtattgttagcgttccctctggatagtcttgttgaacacgcatca |
2394234 |
T |
|
| Q |
116 |
gctacacgtggtaggtacaggtggcggattcaaatatacacgtatttgttaccctactatgtgtaactccccacttaggcagctttgttattatcataat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2394233 |
gctacacgtggtaggtacaggtggcggattcaaatatacacgtattcgttaccctactatgtgtaactccccacttaggcagctttgttattatcataat |
2394134 |
T |
|
| Q |
216 |
taagcaaagtgctgtacatctcactgaagcaccaaccctaaaaaagtacacataaacagaaatcatttgcacaaatgctatattgtgtctgctcattggg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2394133 |
taagcaaagtgctgtacatctcactgaagcaccaaccctaaaaaagtacacataaacagaaatcatttgcacaaatgctatattgtgtctgctcattggg |
2394034 |
T |
|
| Q |
316 |
tggttaggcaaaaaatcatgtttatttatactcccacatactctctttctaactatgtgttcatcttgtgcttgcttgtggaaactgtgtgtctgcgtgt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2394033 |
tggttaggcaaaaaatcatgtttatttatactcccacatactctctttctaactatgtgttcatcttgtgcttgcttgtggaaactgtgtgtctgcgtgt |
2393934 |
T |
|
| Q |
416 |
gtaacatgcttgcctcaaggttaacatgttcttgctccttgctcat |
461 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2393933 |
gtaacatgcttgcctcaaggttaacatattcttgctccttgctcat |
2393888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University