View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16569_low_27 (Length: 476)

Name: NF16569_low_27
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16569_low_27
NF16569_low_27
[»] chr3 (10 HSPs)
chr3 (23-287)||(2503351-2503613)
chr3 (18-207)||(2643327-2643516)
chr3 (206-291)||(2642984-2643069)
chr3 (75-210)||(7332644-7332778)
chr3 (181-277)||(2631965-2632061)
chr3 (24-109)||(7332787-7332872)
chr3 (42-165)||(2494056-2494178)
chr3 (195-279)||(7437799-7437882)
chr3 (229-274)||(7332589-7332634)
chr3 (186-230)||(7439023-7439067)
[»] scaffold0019 (1 HSPs)
scaffold0019 (77-161)||(566-648)
[»] chr5 (3 HSPs)
chr5 (27-86)||(20298208-20298267)
chr5 (27-88)||(20303261-20303322)
chr5 (27-88)||(20307674-20307735)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 7e-81; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 2503351 - 2503613
Alignment:
Q  23 gtggtgatgatagttttgcaattatagggtttttcatgatacctaggtcctctctttcttctttttgaacgatataaaatcaactagttatctagagaac 122  Q
    ||||||||||||||| |||| |||||| ||| |||||  |||||||||||| |||||| |||||||||||||| |||||||||||  |||||||||||      
T  2503351 gtggtgatgatagttgtgcagttatagagttgttcattgtacctaggtcctatctttcctctttttgaacgatttaaaatcaactc-ttatctagagatt 2503449  T
Q  123 gagagagaacagactaatatcttgaaaacttaagttttcccatcgcaatttgggatatcatggtcattctcagtgtttgttattagcttaattggcttaa 222  Q
    ||||||||||||||| ||| ||||||||||| |||||||| ||  ||  ||||||||||||| |||||||| |||||||||||||||||| |||||||||    
T  2503450 gagagagaacagactcataacttgaaaacttcagttttccaatgacaggttgggatatcatgatcattctc-gtgtttgttattagcttagttggcttaa 2503548  T
Q  223 tttctttacacacttctctggtatgatagtgttgattactgcaaattaataattaaagtatatac 287  Q
    || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2503549 ttgctttacacacttctctggtatgatagcgttgattactgcaaattaataattaaagtatatac 2503613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 2643516 - 2643327
Alignment:
Q  18 tctttgtggtgatgatagttttgcaattatagggtttttcatgatacctaggtcctctctttcttctttttgaacgatataaaatcaactagttatctag 117  Q
    |||| ||||||||||||||| | ||||||||||||||||||||  |||||||| || ||| || ||||||||||| ||||||||||||||||||||||||    
T  2643516 tcttggtggtgatgatagttgtccaattatagggtttttcatgtaacctaggttctttctatcctctttttgaacaatataaaatcaactagttatctag 2643417  T
Q  118 agaacgagagagaacagactaatatcttgaaaacttaagttttcccatcgcaatttgggatatcatggtcattctcagtgtttgttatta 207  Q
    ||| | |||||||||||||| ||||||||||||||| |||||||||||  || ||||||||| |||||||||||||||||||||||||||    
T  2643416 agatcaagagagaacagactcatatcttgaaaacttcagttttcccatgacagtttgggatagcatggtcattctcagtgtttgttatta 2643327  T

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Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 206 - 291
Target Start/End: Complemental strand, 2643069 - 2642984
Alignment:
Q  206 tagcttaattggcttaatttctttacacacttctctggtatgatagtgttgattactgcaaattaataattaaagtatatacgact 291  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2643069 tagcttaattgacttaatttctttacacacttctctggtatgatagtgttgattactgcaaattaataattaaagtatatacgact 2642984  T

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Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 75 - 210
Target Start/End: Complemental strand, 7332778 - 7332644
Alignment:
Q  75 tctttcttctttttgaacgatataaaatcaactagttatctagagaacgagagagaacagactaatatcttgaaaacttaagttttcccatcgcaatttg 174  Q
    |||||| ||||||||||||||||||||||||||| || ||||||||  ||||||||||||||| || ||||| |||||| || ||||||||   | ||||    
T  7332778 tctttcctctttttgaacgatataaaatcaactaattttctagagattgagagagaacagactcatttcttg-aaacttcagctttcccatgatagtttg 7332680  T
Q  175 ggatatcatggtcattctcagtgtttgttattagct 210  Q
    ||||| ||||||||||||||||||||||||| ||||    
T  7332679 ggatagcatggtcattctcagtgtttgttatcagct 7332644  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 181 - 277
Target Start/End: Original strand, 2631965 - 2632061
Alignment:
Q  181 catggtcattctcagtgtttgttattagcttaattggcttaatttctttacacacttctctggtatgatagtgttgattactgcaaattaataatta 277  Q
    ||||||||||||| |||||||| |||| |||||| | ||| |||| |||| |||||  ||| |||||||||||||||||||||||||||||||||||    
T  2631965 catggtcattctctgtgtttgtgattatcttaatagactttatttttttatacactagtctagtatgatagtgttgattactgcaaattaataatta 2632061  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 7332872 - 7332787
Alignment:
Q  24 tggtgatgatagttttgcaattatagggtttttcatgatacctaggtcctctctttcttctttttgaacgatataaaatcaactag 109  Q
    |||||||||||||| |||||||||| |  | ||||||||||||||||||| |||||| || |||| ||| ||||||||| ||||||    
T  7332872 tggtgatgatagttgtgcaattataagaatgttcatgatacctaggtcctttctttcctcgttttcaacaatataaaattaactag 7332787  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 165
Target Start/End: Original strand, 2494056 - 2494178
Alignment:
Q  42 aattatagggtttttcatgatacctaggtcctctctttcttctttttgaacgatataaaatcaactagttatctagagaacgagagagaacagactaata 141  Q
    |||||||||||| ||| ||||  | ||||||| |||||| ||| |||||| ||| | ||||||| ||| ||||||||||  | ||||||| | | | |||    
T  2494056 aattatagggttgttcttgatgtc-aggtcctttctttcctctgtttgaaagatcttaaatcaattagctatctagagattgggagagaatatagtcata 2494154  T
Q  142 tcttgaaaacttaagttttcccat 165  Q
    |||||||||||| |||||||||||    
T  2494155 tcttgaaaacttcagttttcccat 2494178  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 279
Target Start/End: Complemental strand, 7437882 - 7437799
Alignment:
Q  195 gtgtttgttattagcttaattggcttaatttctttacacacttctctggtatgatagtgttgattactgcaaattaataattaaa 279  Q
    ||||||||||||||| ||| |  ||||||| ||||| |||||  ||||||||||||||| |||||| |||||| |||| ||||||    
T  7437882 gtgtttgttattagcgtaaataacttaattgctttatacactagtctggtatgatagtg-tgattagtgcaaaataattattaaa 7437799  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 7332634 - 7332589
Alignment:
Q  229 tacacacttctctggtatgatagtgttgattactgcaaattaataa 274  Q
    |||||||||||||||||||||||   |||||| |||||||||||||    
T  7332634 tacacacttctctggtatgatagcagtgattattgcaaattaataa 7332589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 7439067 - 7439023
Alignment:
Q  186 tcattctcagtgtttgttattagcttaattggcttaatttcttta 230  Q
    |||||||| |||||||||||||||||||||| | ||||| |||||    
T  7439067 tcattctctgtgtttgttattagcttaattgacataattgcttta 7439023  T

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Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 566 - 648
Alignment:
Q  77 tttcttctttttgaacgatataaaatcaactagttatctagagaacgagagagaacagactaatatcttgaaaacttaagttttc 161  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||  | ||||||| ||  | ||||||||||||||| |||||||    
T  566 tttcctctttttgaaagatataaaatcaattagttatctagagattgtgagagaatag--tcatatcttgaaaacttcagttttc 648  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 20298208 - 20298267
Alignment:
Q  27 tgatgatagttttgcaattatagggtttttcatgatacctaggtcctctctttcttcttt 86  Q
    ||||||||||| || |||||||||||||||||||||| ||| ||||| |||||| |||||    
T  20298208 tgatgatagttgtgaaattatagggtttttcatgatatctaagtcctttctttcctcttt 20298267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 20303261 - 20303322
Alignment:
Q  27 tgatgatagttttgcaattatagggtttttcatgatacctaggtcctctctttcttcttttt 88  Q
    ||||||||||| |  |||||||||||||||| ||||| ||| ||||| |||||| |||||||    
T  20303261 tgatgatagttgtaaaattatagggtttttcttgatatctaagtcctttctttcctcttttt 20303322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 20307674 - 20307735
Alignment:
Q  27 tgatgatagttttgcaattatagggtttttcatgatacctaggtcctctctttcttcttttt 88  Q
    ||||||||||| |  |||||||||||||||| ||||| ||| ||||| |||||| |||||||    
T  20307674 tgatgatagttgtaaaattatagggtttttcttgatatctaagtcctttctttcctcttttt 20307735  T

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