View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_29 (Length: 455)
Name: NF16569_low_29
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 414
Target Start/End: Original strand, 37219293 - 37219697
Alignment:
| Q |
16 |
acatcgtaaaataatcaataatgtcccttgaactgtaatatcgtaaatctata--catacatatataaaatatcttttaatcttttctgcatcacttttg |
113 |
Q |
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| T |
37219293 |
acattgtaaaataatcgataatgtcccttgaactgtaatatcgtaaatctatatacatacatatataaaatagcttttaatcttttctgcatcacttttg |
37219392 |
T |
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| Q |
114 |
tctaaaatctatcgtatatattgtcatataattagcaaaacgcagggatttaaaa-tattgttaagattgggggaggctactcaaaacagcttgcaagtt |
212 |
Q |
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| T |
37219393 |
tctaaaatctatcgtatat---gtcatataatttgcaaaacgcagggatttaaaaatattgttaagattgggggaggctactcaaaacagcttgcaagtt |
37219489 |
T |
|
| Q |
213 |
ccgtccataattttatatgtatgaacgtgtatttctataaatccttgtgaacttacttaacatgcgagtgtttgtaa-------tcagttggtatggtgt |
305 |
Q |
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| T |
37219490 |
ccgcccataattttatatgtatgaacgtgtatttctataaatccttgtgaacttacttaacatgcgagtgtttgtaaacccacttcaggtggta-ggtgt |
37219588 |
T |
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| Q |
306 |
tgatttgaatgacatgtttttcttaacgtc-gatgttccatcttttcaagtgacaatttcaatgagttagtatggtctattaaaaagaaaaatcgagtgt |
404 |
Q |
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| T |
37219589 |
tgatttgaatggcatgtttttcttaacgtctgatgttccatcttctcgagtgacaatttcaatgagttagtatggtctattaaaaa-aaaaatccagtgt |
37219687 |
T |
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| Q |
405 |
atttctaatt |
414 |
Q |
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| T |
37219688 |
atatctaatt |
37219697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 442
Target Start/End: Original strand, 37219720 - 37219754
Alignment:
| Q |
408 |
tctaattttattttatgaatattgtctagtataat |
442 |
Q |
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| T |
37219720 |
tctaattttattttatgaatattgtctagtataat |
37219754 |
T |
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