View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_3 (Length: 742)
Name: NF16569_low_3
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 668; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 12 - 737
Target Start/End: Original strand, 45199131 - 45199866
Alignment:
| Q |
12 |
tggtggtggtggtttggatatggtggtttctgattcaaccaagcgtgattcggggtccagcagttcaagggatcctgaagtggaagaagaatatcaaatt |
111 |
Q |
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| T |
45199131 |
tggtggtggtggtttggatatggtggtttctgattcaaccaagcgtgattcggggtccagcagttcaagggatcctgaagtggaagaagaatatcaaatt |
45199230 |
T |
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| Q |
112 |
cagcttgctttagagctgagcgcaaaggaggatcctgaggctgtacagattgaagctgttaagcagatcagtttgggatcttgtcaccctgataatacac |
211 |
Q |
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| T |
45199231 |
cagcttgctttagagctgagtgcaaaggaggatcccgaggctgtacagattgaagctgttaagcaaatcagtttgggatcttgtcaccctgataatacac |
45199330 |
T |
|
| Q |
212 |
cagctgaagttgtcgcataccgatattgggtaagtcaaagttaatttattagtctgttgacttacaaggttgaaatgttgaatgaagtcacattgttatg |
311 |
Q |
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| T |
45199331 |
cagctgaagttgtcgcataccgatactgggtaagtcaaagttaatttattagtctgttgacttacaaggttgaaatgttgaatgaagtcatattgttatg |
45199430 |
T |
|
| Q |
312 |
cttgtgatgtgatggtggaaccacaacaaaaggattattattgtgcacacactgttacaaatagtactaggcatacattattttgaaaagaaccattaca |
411 |
Q |
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| T |
45199431 |
cttgtgatgtgatggtggaaccacaacaaaaggattattattgtgcacacactgttacaaatagtacaaggcatacattattttgaaaagaaccattaca |
45199530 |
T |
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| Q |
412 |
gagatg------ca----aatagtttgaatcatggagtggggtggatgaaatgtagggactactttagatgcaatttgtgatagaaaagtattactcaag |
501 |
Q |
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| T |
45199531 |
gagatggtgcttcatttgcatagtttgaatcatggagtggggtggatgaaatgtagggactactttagatgcaatttgtgatagaaaagtattactcaag |
45199630 |
T |
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| Q |
502 |
cctaaggaaaaacattacagcacaactatagaatctgcaatgttgtacatgattgttaagtgatatagagctaataagaaatcaatgtcaatattgcaag |
601 |
Q |
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| T |
45199631 |
cctaaggaaaaacattacagcacaactatagaatctgcaatgttgtacatgattgttaagtgatatagagctaataagaaatcaatgtcaatattgcaag |
45199730 |
T |
|
| Q |
602 |
ataaaaatgttatgatggataagtggacacacaaagcatgatataattaggattaaaagcattagagacaaagttgtggtagaacttatttgaaaaatat |
701 |
Q |
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| T |
45199731 |
ataaaaatgttatgatggataagtggacacacaaagcatgatataattaggattaaaagcattagagacaaagttgtggtagaacttatttgaaaaatat |
45199830 |
T |
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| Q |
702 |
ggcgggctttcgccttagatggtttcttgatctgtg |
737 |
Q |
| |
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| T |
45199831 |
ggcgggctttcgccttagatggtttcttgatctgtg |
45199866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 74 - 242
Target Start/End: Original strand, 30001072 - 30001240
Alignment:
| Q |
74 |
gttcaagggatcctgaagtggaagaagaatatcaaattcagcttgctttagagctgagcgcaaaggaggatcctgaggctgtacagattgaagctgttaa |
173 |
Q |
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|||||||||||| ||||||||| ||||| |||||| | | | ||||| ||| |||| ||||||||||||||||| ||||| |||||||||||||| || |
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| T |
30001072 |
gttcaagggatcatgaagtggaggaagagtatcaattaaaattggctttggagttgagtgcaaaggaggatcctgaagctgtgcagattgaagctgtgaa |
30001171 |
T |
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| Q |
174 |
gcagatcagtttgggatcttgtcaccctgataatacaccagctgaagttgtcgcataccgatattgggt |
242 |
Q |
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|||||| |||||||| |||||| | ||||||||||||||||||||| |||| |||||| |||| ||||| |
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| T |
30001172 |
gcagattagtttggggtcttgtgatcctgataatacaccagctgaaattgtggcatacagatactgggt |
30001240 |
T |
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