View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16569_low_31 (Length: 436)
Name: NF16569_low_31
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 6 - 420
Target Start/End: Complemental strand, 17779692 - 17779278
Alignment:
| Q |
6 |
tagattatacttatgtaaaaataaaaggtacaaattaagtgtaacacttggttattgaataactagagggaacatcaataggacaaaatgaagtatccca |
105 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17779692 |
tagattctacttatgtaaaaataaaaggtacaaattaagtgtaacacttggttgttgaataactagagggaacatcaataggacaaaatgaagtatccca |
17779593 |
T |
|
| Q |
106 |
aagcaaatttgacttccatgcatcaccaatattgaaattcatcaattcttgttcatcaatacgaggcacattcacattaacattataaggtaccttaacc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17779592 |
aagcaaatttgacttccatgcatcaccaatattgaaattcatcaattcttgttcatcaatacgaggcacattcatattaacattataaggtaccttaacc |
17779493 |
T |
|
| Q |
206 |
aatgcattattatcatattggtaattaccaaatggtaatgagtagtcactaaattgctcttgcaacccaccattcatgaaatttgtagttgtaacctcat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17779492 |
aatgcattattatcatattggtaattaccaaatggtaatgagtagtcactaaattgctcttgcaacccaccattcatgaaatttgtagttgtaacctcat |
17779393 |
T |
|
| Q |
306 |
cacatgtcttgctaaagtcaccaagcattgaggatgatgatgacatattcaacaacattgatgaaacatccattgtagatttggtaataatatcactatt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17779392 |
cacatgtcttgctaaagtcaccaagcattgaggatgatgatgacatattcaacaacattgatgaaacatccattgtagatttggaaataatatcactatt |
17779293 |
T |
|
| Q |
406 |
agtgttagatgtttc |
420 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
17779292 |
agtgttagatgtttc |
17779278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University