View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_33 (Length: 425)
Name: NF16569_low_33
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 21 - 413
Target Start/End: Complemental strand, 53068875 - 53068483
Alignment:
| Q |
21 |
aataggtttgttatcagaaagcttggatgtcaccaaattgggcaagcatttgatcttgtctgctgttttaggaacaaactccctcaaaggatatacattt |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53068875 |
aataggtttgttatcagaaagcttggatgtcaccaaattgggcaagcatttgatcttgtctgctgttttaggaacaaactccctcaaaggatatacattt |
53068776 |
T |
|
| Q |
121 |
acattatttgtttgcaattcctctagaaggggaaaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacactatccaagtggagagttt |
220 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
53068775 |
acattatttgtttgcaattcctctagaaggggaaaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacaccatccaagtggagagttt |
53068676 |
T |
|
| Q |
221 |
tgagtagtgaaatagtactacttatttgaggaatgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttgga |
320 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53068675 |
tgagtagtgaaatagtactatttatttgaggaatgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttgga |
53068576 |
T |
|
| Q |
321 |
agctaatttcaagtcgaaagtatgaaacaacatgttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataagtttggtgatatt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53068575 |
agctaatttcaagtcgaaagtatgaaacaacatgttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataagtttggtgatatt |
53068483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 21 - 407
Target Start/End: Complemental strand, 53059649 - 53059263
Alignment:
| Q |
21 |
aataggtttgttatcagaaagcttggatgtcaccaaattgggcaagcatttgatcttgtctgctgttttaggaacaaactccctcaaaggatatacattt |
120 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
53059649 |
aataggtttgttatcagaaagcttggctgtcaccaaattgggcaagcatttgatcttgtctgctgttttaggaacaaactccctcaaaggaaataccttt |
53059550 |
T |
|
| Q |
121 |
acattatttgtttgcaattcctctagaaggggaaaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacactatccaagtggagagttt |
220 |
Q |
| |
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|| |||||||||||||||||||| |||| ||||||| | || ||||||||||||| |||| |||||||||||||| ||| ||||||||||||||||||| |
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| T |
53059549 |
actttatttgtttgcaattcctccagaatgggaaagaacaagagaaagtcgatgatctgtttatgagtgttgaaagtaacgctatccaagtggagagttt |
53059450 |
T |
|
| Q |
221 |
tgagtagtgaaatagtactacttatttgaggaatgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttgga |
320 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| || |||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||| |
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| T |
53059449 |
tgagtagtgaaatagtattatttatttgaggaatgtctccgaggattgttaggtgttttaatttgagaacagtaagcgtcatacaagtgaatatgttgga |
53059350 |
T |
|
| Q |
321 |
agctaatttcaagtcgaaagtatgaaacaacatgttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataagtttggt |
407 |
Q |
| |
|
||||||||||| ||| ||| || | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
53059349 |
agctaatttcatgtctaaaaaattagacaacatgttaagttcaagggtttcagttcgtctttgtattgctgcaatgataagtttggt |
53059263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 269 - 409
Target Start/End: Original strand, 53340729 - 53340869
Alignment:
| Q |
269 |
ttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttggaagctaatttcaagtcgaaagtatgaaacaacatgttaagttcaagggt |
368 |
Q |
| |
|
||||| |||||||||| ||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
53340729 |
ttaggagttttaatttaagaacagtaaacttcctacaagtgaatatgttggaagctaatttcatgtcgaaagtatgaaacaacatgttaagttcaagggt |
53340828 |
T |
|
| Q |
369 |
ttcagttcgtctttgtatcgctgcaatgataagtttggtga |
409 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| ||||| |
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| T |
53340829 |
ttcagttcgtctttgtatggctgcaataataagttgggtga |
53340869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 134 - 402
Target Start/End: Complemental strand, 37418805 - 37418534
Alignment:
| Q |
134 |
gcaattcctctagaaggggaaaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacactatccaagtggagagttttgagtagtgaaat |
233 |
Q |
| |
|
||||||||||||||| ||||||||| || |||||||| |||| | ||| |||| |||||| ||||| ||| ||||||||||||||||| ||||||| |
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|
| T |
37418805 |
gcaattcctctagaatgggaaaggaaaagagaaagtcaatgataagcgtacgagtcatgaaatgaacacaatctaagtggagagttttgagccgtgaaat |
37418706 |
T |
|
| Q |
234 |
agtactact---tatttgaggaatgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttggaagctaatttc |
330 |
Q |
| |
|
|||| || | ||| |||||||| | | |||||||| ||| |||||||||||||||| ||| |||||||| |||||||| ||||||||||||||| |
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| T |
37418705 |
agtattattagttatctgaggaattttgtcaacgattgtaaggttgtttaatttgagaacagtaagcgtcctacaggtgaatattttggaagctaatttc |
37418606 |
T |
|
| Q |
331 |
aagtcgaaagtatgaaacaacatgttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataagt |
402 |
Q |
| |
|
| ||| |||| || ||| |||| | |||||||||||||||||| |||||||||| |||||||| |||||| |
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|
| T |
37418605 |
atgtctaaaggataaaaatacatacttagttcaagggtttcagtttgtctttgtattgctgcaataataagt |
37418534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 37418954 - 37418891
Alignment:
| Q |
21 |
aataggtttgttatcagaaagcttggatgtcaccaaattgggcaagcatttgatcttgtctgct |
84 |
Q |
| |
|
|||||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
37418954 |
aataggttcgctatcataaagcttggctgtcaccaaattgggcaagcatttgatcttgtctgct |
37418891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 53062725 - 53062574
Alignment:
| Q |
21 |
aataggtttgttatcagaaagcttggatgtcaccaaattgggcaagcatttgatcttgtc---tgctgttttaggaacaaactccctcaaaggatataca |
117 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||| |||||||||||| |||||||||||| ||||||||| |||||| || | ||||| |
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|
| T |
53062725 |
aatagctttgctatcagaaagcttggctgtcactaaattgggcaagtgtttgatcttgtccgctgctgtttttggaacaggt------aatttaaataca |
53062632 |
T |
|
| Q |
118 |
tttacattatttgtttgcaattcctctagaaggggaaaggataatagaaagtcgatga |
175 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||||| || |||| ||||| |
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|
| T |
53062631 |
tatacattatttgtttgcaattcctctagaatgggaaaggataagagcaagttgatga |
53062574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 53062540 - 53062465
Alignment:
| Q |
242 |
ttatttgaggaatgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgtt |
317 |
Q |
| |
|
|||||||||||||||| || | ||||| ||||| |||| ||||||||||| ||| ||||||||||| |||||||| |
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|
| T |
53062540 |
ttatttgaggaatgtcattcatgattgataggccatttattttgagaacagtaagcgtcctacaagtaaatatgtt |
53062465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 53340696 - 53340729
Alignment:
| Q |
310 |
aatatgttggaagctaatttcaagtcgaaagtat |
343 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
53340696 |
aatatgttggaagctaatttcatgtcgaaagtat |
53340729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 34036080 - 34036000
Alignment:
| Q |
36 |
agaaagcttggatgtcaccaaattgggcaagcatttgatcttgtctgctgttttaggaacaaactccctcaaaggatatac |
116 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
34036080 |
agaaagcttggctgtcaccaaattgggcaagcatttgatcttgtctgctgtttttggaacaaactccctcaaaggatatac |
34036000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 403
Target Start/End: Complemental strand, 31014069 - 31013973
Alignment:
| Q |
307 |
gtgaatatgttggaagctaatttcaagtcgaaagtatgaaacaacatgttaagttcaagggtttcagttcgtctttgtatcgctgcaatgataagtt |
403 |
Q |
| |
|
|||||||| |||||| ||||||||| ||| |||| || |||||||||||||||||||||||||||||||| ||||||||| ||||| || ||||||| |
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|
| T |
31014069 |
gtgaatattttggaaactaatttcatgtctaaagaatcaaacaacatgttaagttcaagggtttcagttcatctttgtattgctgcgataataagtt |
31013973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 31014226 - 31014159
Alignment:
| Q |
129 |
tgtttgcaattcctctagaaggggaaaggataatagaaagtcgatgagctgtgtatgagtgttgaaat |
196 |
Q |
| |
|
||||| |||||||||||||| ||||||||| || ||||||||||||| |||| ||||||||||||||| |
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| T |
31014226 |
tgttttcaattcctctagaatgggaaaggacaagagaaagtcgatgatctgtttatgagtgttgaaat |
31014159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 135 - 323
Target Start/End: Complemental strand, 6687718 - 6687530
Alignment:
| Q |
135 |
caattcctctagaaggggaaaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacactatccaagtggagagttttgagtagtgaaata |
234 |
Q |
| |
|
||||||||| |||| ||||||||| || ||||||||||||| |||||| |||| ||||| |||| |||| ||||||||||||||||| || ||||| |
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|
| T |
6687718 |
caattcctcgagaatgggaaaggaaaagagaaagtcgatgatatgtgtacgagtcatgaaacgaacagtatctaagtggagagttttgaggtgtcaaata |
6687619 |
T |
|
| Q |
235 |
gtactacttatttgaggaatgtctttgacgattgttaggcgttttaatttgagaacagcaagtgtcctacaagtgaatatgttggaagc |
323 |
Q |
| |
|
| | || |||||||||||||||| | |||| |||| ||||||||||||||| ||| ||||||||||||||||| |||||||| |
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|
| T |
6687618 |
ggattatttatttgaggaatgtcgtgtcggattactaggtcagttaatttgagaacagtaagcgtcctacaagtgaatatcttggaagc |
6687530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 6687865 - 6687804
Alignment:
| Q |
21 |
aataggtttgttatcagaaagcttggatgtcaccaaattgggcaagcatttgatcttgtctg |
82 |
Q |
| |
|
|||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
6687865 |
aataggttcgttatcacaaagcttggctgtcaccaaattgggcaagcatttgatcttgtctg |
6687804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 48828422 - 48828332
Alignment:
| Q |
141 |
ctctagaaggggaaaggataatagaaagtcgatgagctgtgtatgagtgttgaaataaacactatccaagtggagagttttgagtagtgaa |
231 |
Q |
| |
|
|||||| | ||||||||| || ||||||| ||||| |||||||| || ||||| |||| |||||||||| |||||||||||||||||| |
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|
| T |
48828422 |
ctctaggatgggaaaggaaaagagaaagttgatgatgtgtgtatgggttatgaaaagaacattatccaagtgaagagttttgagtagtgaa |
48828332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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