View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_34 (Length: 424)
Name: NF16569_low_34
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 405
Target Start/End: Complemental strand, 48819585 - 48819195
Alignment:
| Q |
16 |
attgaatggcatgcataccaatatcaaatggaagcacactaaaattttttaaccactgtaaaatagctgaccagatacaccagaaagatattgaactcca |
115 |
Q |
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| T |
48819585 |
attgaatggcatgcataccaatatcagatggacgcacactaaaaaatttcaaccactgtaaaatagctgatcagatacaccagaaagatattgaactcca |
48819486 |
T |
|
| Q |
116 |
taaacaaataattaattgctttttgtttcccgctacgatgctactccaaaaactgaccaaagaccttgaatattgaagatcaccacaccaagcaaagttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48819485 |
taaacaaataattaattgctttttgtttcccgctacaacgctactccaaaaactgaccaaagaccttgaa---tgaagatcaccacaccaagcaaagttg |
48819389 |
T |
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| Q |
216 |
tctttttctcggtatccttttatcaaataattgtcgcacaaagagagagactttgagaagcaccggtttattccatacgatgcctgtgaaaggagaataa |
315 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
48819388 |
tc-ttttctcggtatccttttatcaaataattgtcgcacaaagagagagactttgagaagcaccgatttattccatacgatgtctgtgaaaggagaataa |
48819290 |
T |
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| Q |
316 |
acatgttgctattcagaaat-aatatattatata----tttgacggtataaccatgttttgggtcaatttttcaaaaccaagtgtccgtaaccga |
405 |
Q |
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|||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48819289 |
acatgttgctattcagaaatcaacatattatatattcctttgacggtataaccatgttttgggtcaatttttcaaaaccaagtgtccgcaaccga |
48819195 |
T |
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