View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_36 (Length: 420)
Name: NF16569_low_36
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 83 - 403
Target Start/End: Complemental strand, 43858968 - 43858644
Alignment:
| Q |
83 |
aaatgatcattcaacttatcccactagtaagtgctgatgatgtgaatatctgtttgccatgtcattagaaaatgacagcaatggtggaggccaattctga |
182 |
Q |
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| T |
43858968 |
aaatgatcattcaacttatcccactagtaagtgctgatgatgtgaatatctgtttgccatgtcattagaaaatgacagcaatggtggaggccaattctga |
43858869 |
T |
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| Q |
183 |
aagcatgcaatgaaggattaaagtatgagnnnnnnnggagtaaggattaaagttagataaaaagttctgaaaacgatctataagatttatttggatcagt |
282 |
Q |
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| T |
43858868 |
aagcatgcaatgaaggattaaagtatgagaaaaaaaggagtaaggattaaagttagataaaaagttctgaaaacgatctataagatttatttggatcagt |
43858769 |
T |
|
| Q |
283 |
act----gtattggattgattttcaatttaagatttgaaaactatttcattctaaacaaatctgttgtctgattttccatttgctacatattaaaatctt |
378 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43858768 |
acgtaccgtattggattgattttcaatttaagatttgaaaactatttcattctaaacaaatctggtgtctgattttccatttgctacatattaaaatctt |
43858669 |
T |
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| Q |
379 |
tcagtcactttatatactagattac |
403 |
Q |
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||||||||||||||||||||||||| |
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| T |
43858668 |
tcagtcactttatatactagattac |
43858644 |
T |
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