View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_37 (Length: 412)
Name: NF16569_low_37
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_37 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 32666736 - 32667134
Alignment:
| Q |
14 |
catcatcatacgccaataataagtcaatgcagctggaactgaaccaatcatcaatatcaacctccatgcaacgtcagcctccggcggcacatcaaaagcc |
113 |
Q |
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| T |
32666736 |
catcatcatacgccaataataagtcaatgcagctggaactgaaccaatcatcaatatcaacctccatgcaacgtcagcctccggcggcacatcaaaagcc |
32666835 |
T |
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| Q |
114 |
gttgccggcttcgaaccgctgcgaaataccaagcaaaccaccatagtaacagttgcactagccaatataccaaacccttgcatagaaaaaaccgcagcta |
213 |
Q |
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| T |
32666836 |
gttgccggcttcgaaccgctgcgaaataccaagcaaaccaccatagtaacagttgcactagccaatataccaaacccttgcatagaaaaaaccgcagcta |
32666935 |
T |
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| Q |
214 |
taaaagaacctcttgtccttttatttgcaaactcagacataatggtagaagataaaggataatcaccaccaattccaagccctaagaagaatctaaagaa |
313 |
Q |
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| T |
32666936 |
taaaagaacctcttgtccttttattagcaaactcagacataatggtagaagataaaggataatcaccaccaattccaagccctaagaagaatctaaagaa |
32667035 |
T |
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| Q |
314 |
accaagagatagtaaaacacaagctctctttgttgtacagatggagaagccagaagctagagagcttgttagcatcaataataaggcgataccgtagac |
412 |
Q |
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| T |
32667036 |
accaagagatagtaaaacacaagctctctttgttgtacagatggagaagccagaagctagagagcttgttagcatcaataataaggcgataccgtagac |
32667134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 321
Target Start/End: Original strand, 37315765 - 37315913
Alignment:
| Q |
173 |
agccaatataccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttatttgcaaactcagacataatggtagaagataaagga |
272 |
Q |
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| T |
37315765 |
agccaaaattccaaacccttgcatagcaaaaaccgaagctataaacgcgccacgagtctttttgttggcatattcagacataatagtagctgaaagaggg |
37315864 |
T |
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| Q |
273 |
taatcaccaccaattccaagccctaagaagaatctaaagaaaccaagag |
321 |
Q |
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| T |
37315865 |
taatcaccaccaataccaaaacctagccagaatctaaagaaacaaagag |
37315913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 33109402 - 33109294
Alignment:
| Q |
183 |
ccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttatttgcaaactcagacataatggtagaagataaaggataatcaccac |
282 |
Q |
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| T |
33109402 |
ccaaatccttgcatagcaaacactgcagcgataaaagctcctcgcgtcttcttgttcgcatactcagacataattgtagcagaaagagggtaatcaccac |
33109303 |
T |
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| Q |
283 |
caattccaa |
291 |
Q |
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| T |
33109302 |
caattccaa |
33109294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 33115437 - 33115329
Alignment:
| Q |
183 |
ccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttatttgcaaactcagacataatggtagaagataaaggataatcaccac |
282 |
Q |
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||||| |||||||||| ||||| || |||||||| | ||| | ||| ||||||||||| |||||||||| || |||| || | ||| |||||||| | |
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| T |
33115437 |
ccaaaaccttgcatagcgaaaacagccgctataaatgcaccacgagtctttttatttgcatactcagacatgatagtagctgaaagagggtaatcaccgc |
33115338 |
T |
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| Q |
283 |
caattccaa |
291 |
Q |
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| T |
33115337 |
caattccaa |
33115329 |
T |
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