View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_38 (Length: 406)
Name: NF16569_low_38
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_38 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 3448881 - 3449279
Alignment:
| Q |
1 |
cttatcatcgctgcaccttctctgattctacagagcgcttcaccgagattacttgcggagcttataaaaggtgttcggaaattgtgtttgttgatgtgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3448881 |
cttatcatcgctgcaccttctctgattctacagagcgcttcaccgagattacttgcggagcttataaaaggtgttcggaaattgtgtttgttgatgtgat |
3448980 |
T |
|
| Q |
101 |
tctgatcatcggcgatggtgagagattcgttttcgtcgatgtaatcaacgccggtggcttcgaggatttgagcttcgacgaaatggccgattctgacggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3448981 |
tctgatcatcggcgatggtgagagattcgttttcgtcgatgtaatcaacgccggtggcttcgaggatttgagcttcgacgaaatggccgattctgacggg |
3449080 |
T |
|
| Q |
201 |
ggagatgactgggattgaaacggagcgtttgatggacttgatgagggaaggatcggtcatgcgttgttgatcggagacggtgacggcgcaggcgccggct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3449081 |
ggagatgactgggattgaaacggagcgtttgatggatttgatgagggaaggatcggtcatgcgttgttgatcggagacggtgacggcgcaggcgccggct |
3449180 |
T |
|
| Q |
301 |
tgttcgacgattttggcttggtggaggttggtgacctggaaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttgg |
399 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3449181 |
tgttcagcgattttggcttggtggaggttggtgacctggaaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttgg |
3449279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 126 - 397
Target Start/End: Complemental strand, 35039103 - 35038832
Alignment:
| Q |
126 |
ttcgttttcgtcgatgtaatcaacgccggtggcttcgaggatttgagcttcgacgaaatggccgattctgacgggggagatgactgggattgaaacggag |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| || |||||||||||| |
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| T |
35039103 |
ttcgttttcgtcgatgtaatcaacgccggtggcttcgaggatttaagcttcgacgaaatgaccgattctgacaggggagatgacaggaattgaaacggag |
35039004 |
T |
|
| Q |
226 |
cgtttgatggacttgatgagggaaggatcggtcatgcgttgttgatcggagacggtgacggcgcaggcgccggcttgttcgacgattttggcttggtgga |
325 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||||||||| |||||||||||||||| |
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| T |
35039003 |
tgtttgatggatttgatgagggaaggatcggtcatacgttgttgatcggagacggtgacgacacaggcgccgacttgttcgaccattttggcttggtgga |
35038904 |
T |
|
| Q |
326 |
ggttggtgacctggaaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggttt |
397 |
Q |
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| T |
35038903 |
gattggtgacgtggagaattgcgccgccgcatagggtttgggtgagggatagtttgaatgagtatggggttt |
35038832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 126 - 397
Target Start/End: Original strand, 46205097 - 46205358
Alignment:
| Q |
126 |
ttcgttttcgtcgatgtaatcaacgccggtggcttcgaggatttgagcttcgacgaaatggccgattctgacgggggagatgactgggattgaaacggag |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||||||||||||||||| || |||||||||||| |
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| T |
46205097 |
ttcgttttcgtcgatgtaatcaacgccggtggcttcgaggatttaagcttcgacgacacgatcgattctgacgggggagatgacgggaattgaaacggag |
46205196 |
T |
|
| Q |
226 |
cgtttgatggacttgatgagggaaggatcggtcatgcgttgttgatcggagacggtgacggcgcaggcgccggcttgttcgacgattttggcttggtgga |
325 |
Q |
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|||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| |||||||| | |||||||| |
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| T |
46205197 |
tgtttgatggatttgatgagggaaggatcggtcatacattgttgatcggagacggtgacggcacaggcgccgacttgttcggccattttggc-------- |
46205288 |
T |
|
| Q |
326 |
ggttggtgacctggaaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggttt |
397 |
Q |
| |
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|||||||| |||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46205289 |
--ttggtgacgtggagaattgcgccgccacagagggtttgggtgagggatagtttgaatgagtatggggttt |
46205358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 126 - 397
Target Start/End: Complemental strand, 41587881 - 41587611
Alignment:
| Q |
126 |
ttcgttttcgtcgatgtaatcaacgccggtggcttcgaggatttgagcttcgacgaaatggccgattctgacgggggagatgactgggattgaaacggag |
225 |
Q |
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||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||| ||| ||||| ||||| ||| ||||| | || |||||||| ||| |
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| T |
41587881 |
ttcgttttcgtcgatgtaatcaacgtcggtggcttcaaagatttaagcttcgacgacatgaccgatcctgacagggaagatggcgggaattgaaacagag |
41587782 |
T |
|
| Q |
226 |
cgtttgatggacttgatgagggaaggatcggtcatgcgttgttgatcggagacggtgacggcgcaggcgccggcttgttcgacgattttggcttggtgga |
325 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | ||| || | |||| |||||| | | |||||||||||||||| |
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| T |
41587781 |
tgtttgatggatttgatgagggaaggatcggtcatacgttgttgatcggagacggtaaaggcacatgtgccgacttgtttggccattttggcttggtgga |
41587682 |
T |
|
| Q |
326 |
ggttggtgacctggaaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggttt |
397 |
Q |
| |
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| |||||||| |||| |||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41587681 |
gattggtgacgtggagaattgcgccgccgcagagggtttg-gtgagggatagtttgaatgagtatggggttt |
41587611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 1 - 60
Alignment:
| Q |
340 |
aaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttgg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1 |
aaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttgg |
60 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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