View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_39 (Length: 403)
Name: NF16569_low_39
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 386
Target Start/End: Original strand, 9267701 - 9268082
Alignment:
| Q |
9 |
gattattcttgatcaaataagtctgcaagatgaattgtgt-ttaacttgtaaagtttaagaaactaa---ttgaaaaacagaatatgacttggcactccc |
104 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
9267701 |
gattcttcttgatcaaataagtctgcaagatgaattgtgagttaacttgtaaagtttaagaaactaaaaattgaaaaacagaatatgacttggcactcac |
9267800 |
T |
|
| Q |
105 |
caatgcagcttcgatgcaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgatgaagcgagcggtagcatccctggatgctttccaccgtg |
204 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9267801 |
caatgcagctccgatgcaaaaacttgtcgctcctttcagcaactctcccccaatgctccgacgaagcgagcggtagcatccctggatgctttccaccgtg |
9267900 |
T |
|
| Q |
205 |
agaggagttgtggttggaggagctggtggtggttgctgttccacaacaatatgaatttcattgttcaatgatgccatcttgctcagtttctctgtggaat |
304 |
Q |
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| T |
9267901 |
acaggagttgtggttggaggagctggtggtggttgctgttccacaacaacatgaatttcattgttcaatgatgccatcttgctcagtttctctgttgaat |
9268000 |
T |
|
| Q |
305 |
ttttgttgttgttgaaggaaatggaactgaagtgcagtgcttgcaatgcaagtgtttttgtttccaaattgagagtttattt |
386 |
Q |
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| T |
9268001 |
ttttgttgttgttgaaggaaatggaactgaagtgctgtgcgtgcaaagcaagtgtttttgtttccaaattgagagtctattt |
9268082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 386
Target Start/End: Original strand, 9263422 - 9263803
Alignment:
| Q |
9 |
gattattcttgatcaaataagtctgcaagatgaattgtgtttaacttgtaaagtttaagaaactaa---ttgaaaaacagaatatgacttggcactcccc |
105 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
9263422 |
gattcttcttgatcaaataagtctgcaagatgaattgtggttaacttgtaaagtttaagaaactaaaaattgaaaaacagaatatgacttggcacttacc |
9263521 |
T |
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| Q |
106 |
aatgcagcttcgatgcaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgatgaagcgagcggtagcatccctggatgctttccaccgtga |
205 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
9263522 |
aatgcagctccgatgcaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgacgaagcgagcggtagaatccctggatgctttccaccgtga |
9263621 |
T |
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| Q |
206 |
gaggagttgtggttggaggagctggtggtggttgctgttccacaacaatatgaatttcattgttcaatgatgccatcttgctcagtttctctgtgga-at |
304 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || | |
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| T |
9263622 |
gaggagttgtggttggaggagctgctggtggtggctgttccacaacaatctgaatttcattgttcaatgatgccatcttgcttagtttctctgttgattt |
9263721 |
T |
|
| Q |
305 |
ttttgttgttgttgaaggaaatggaactgaagtgcagtgcttgcaatgcaagtgtttttgtttccaaattgagagtttattt |
386 |
Q |
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| T |
9263722 |
tttttttgttgttaaaggaaatggaactgaagtgcagtgcgtgcaatgcaagtgtttttgtttccaaattgagagtctattt |
9263803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 386
Target Start/End: Complemental strand, 9263203 - 9262822
Alignment:
| Q |
9 |
gattattcttgatcaaataagtctgcaagatgaattgtgt-ttaacttgtaaagtttaagaaactaa---ttgaaaaacagaatatgacttggcactccc |
104 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| ||||||||| | |
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| T |
9263203 |
gattcttcttgatcaaataagtctgcaagatgaattgtgagttaacttgtaaagtttaagaaactaaaaattaaaaaacagaatatgaattggcactcac |
9263104 |
T |
|
| Q |
105 |
caatgcagcttcgatgcaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgatgaagcgagcggtagcatccctggatgctttccaccgtg |
204 |
Q |
| |
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||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |
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| T |
9263103 |
caatgtagctcggatgaaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgacaaagcgagcggtagcatccctggattcttttcaccgtg |
9263004 |
T |
|
| Q |
205 |
agaggagttgtggttggaggagctggtggtggttgctgttccacaacaatatgaatttcattgttcaatgatgccatcttgctcagtttctctgtggaat |
304 |
Q |
| |
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||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||| |||| |
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| T |
9263003 |
agaggagttgtggttggaggagctgctagtggtggctgttccacaacaatctgaatttcattgttcaatgatgtcatcttgctcaatttctctgttgaat |
9262904 |
T |
|
| Q |
305 |
ttttgttgttgttgaaggaaatggaactgaagtgcagtgcttgcaatgcaagtgtttttgtttccaaattgagagtttattt |
386 |
Q |
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|||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9262903 |
tttttttgttgttaaaggaaatggaactgaagtgcagtgcgtgcaatgcaagtgtttttgtttccaaattgagagtctattt |
9262822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 117 - 386
Target Start/End: Complemental strand, 9267625 - 9267355
Alignment:
| Q |
117 |
gatgcaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgatgaagcgagcggtagcatccctggatgctttccaccgtgagaggagttgtg |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9267625 |
gatgcaaaaacttgtcgctcctttcagtaactcttccgcaatgcttcgactaagcgagcggtagcatccctggatgctttccaccttgagaggagttgtg |
9267526 |
T |
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| Q |
217 |
gttggaggagctggtggtggttgctgttccacaacaatatgaatttcattgttcaatgatgccatcttgctcagtttctctgtgga-atttttgttgttg |
315 |
Q |
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||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| |
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| T |
9267525 |
gttggaggagctgctggtggtggctgttccacaacaatctgaatttcattgttcaatgatgccatcttgctcagtttctctgttgattttttttttgttg |
9267426 |
T |
|
| Q |
316 |
ttgaaggaaatggaactgaagtgcagtgcttgcaatgcaagtgtttttgtttccaaattgagagtttattt |
386 |
Q |
| |
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|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9267425 |
ttaaaggaaatggaactgaagtgcagtgcgtgcaatgcaagtgtttttgtttccaaattgagagtctattt |
9267355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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