View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_4 (Length: 734)
Name: NF16569_low_4
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 609; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 19 - 718
Target Start/End: Complemental strand, 36857337 - 36856636
Alignment:
| Q |
19 |
tagaacaacaacaatagggtcagtgatgtgccagaatatgttgtagatactgtaagattatagaatccatggcactagacgaccacaaatctgagtacaa |
118 |
Q |
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| T |
36857337 |
tagaacaacaacaataggatcagtgatgtgccagaatatgttgtagatactgtaagattatagaatccatggcactagacgaccacaaatctgagtacaa |
36857238 |
T |
|
| Q |
119 |
cagaggaaacacagcaaagaaagttagattgactaagatacaatcgatacactcttagctcaaaataaacttctcagaaaaactgtgaaggaattgtgtg |
218 |
Q |
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| T |
36857237 |
cagaggaaacacagcaaagaaagttagattgactaagatacaaccgatacactcttagctcaaaataaact---cagaaaaactgtgaaggaattgtgtg |
36857141 |
T |
|
| Q |
219 |
gcacctcaacggatgaaaaacatgcaagaagagaagaccggcttaaaatcaatatgacaacaattaccaaagatatgataatcaaaatttctgaaggcct |
318 |
Q |
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| T |
36857140 |
gcacctcaacggatgaaaaacatgcaagaagagaagaccggcttaaaatcaatatgacaacaattaccaaagatatgataatcaaaatttctgaaggcct |
36857041 |
T |
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| Q |
319 |
caatacctctttcaactgtatcgtcaaaatcctcaagaaaacatattacaagaacttgaggatttgctcaaacaatttatgcaatcatcccaacaaattt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36857040 |
caatacctctttcaactgtatcgtcaaaatcctcaagaaaacatattacaagaacttgaggatttgctcaaacaatttatgcaatcatcccaacaaattt |
36856941 |
T |
|
| Q |
419 |
ataatgccgagacatcactcaagaatctattcaannnnnnnncttgaattgtttcttttcttcttagaaacatcatattaagttatctctttacccttgc |
518 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36856940 |
ataatgccgagacatcactcaagaatctattcaatttcttttcttgaattgtttcttttcttcttagaaacatcatattaagttatctctttacccttgc |
36856841 |
T |
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| Q |
519 |
aaaatacgtgaacaaggcgaaatagaaatatgtcccgaagagggaacatgtgaaaacc-nnnnnnntggtctcctaatcatgctacctcgtttaaataaa |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36856840 |
aaaatacgtgaacaaggcgaaatagaaatatgtcccgaagagggaacatgtgaaaaccaaaaaaaatggtctcctaatcatgctacctcgtttaaataaa |
36856741 |
T |
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| Q |
618 |
taaatccttcctctttaaaatgagttatc----tcttattttctggtaggtgtgtattaacgaatttctttttctaattatttctgtatgggcatagaag |
713 |
Q |
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| T |
36856740 |
taaatccttcctctttaaaatgagttatctctttcttattttctggtaggtgtgtattaacgaagttctttttctaattatttctgtatgggcatagaag |
36856641 |
T |
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| Q |
714 |
ctgac |
718 |
Q |
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||||| |
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| T |
36856640 |
ctgac |
36856636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 647 - 705
Target Start/End: Original strand, 37365747 - 37365805
Alignment:
| Q |
647 |
tcttattttctggtaggtgtgtattaacgaatttctttttctaattatttctgtatggg |
705 |
Q |
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||||||||||||||||||||| |||||| | || | ||||||||||||||||||||| |
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| T |
37365747 |
tcttattttctggtaggtgtgcattaactatatttgtcttctaattatttctgtatggg |
37365805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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