View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_40 (Length: 401)
Name: NF16569_low_40
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 46922382 - 46922217
Alignment:
| Q |
14 |
atatccaacatttttctttataccaatgtctttcatttcctttctgacaacagtggcttcttcccatctgcatttaacaattacaagtatgaccataaga |
113 |
Q |
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| T |
46922382 |
atatccaacatttttctttataccaatgtctttcatttcctttctgacaacagtggcttcttcccatctgcatttaacaattacaagtatgaccataaga |
46922283 |
T |
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| Q |
114 |
gctatgataatgtttgagtcatatgaaagtgacaacatcactttagtttcaactagatatgttctt |
179 |
Q |
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| T |
46922282 |
gctatgataatgtttgagtcatatgaaagtgacaacatcactttagtttcaactagatatgttctt |
46922217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 46922124 - 46922010
Alignment:
| Q |
272 |
ctatcaattcatttaactaaccaaggcaattcaagaaggaaaattaataacatggtataaaatcaatacctgccagcagatgcaagcatattagaaagca |
371 |
Q |
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| T |
46922124 |
ctatcaattcatttaactaagcaagggaattcaagaaggaaaattaataacatggtttaaaatcaatacctgccagcagatgcaagcatattagaaagca |
46922025 |
T |
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| Q |
372 |
ctacatggttgccag |
386 |
Q |
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| T |
46922024 |
ctacatggttgccag |
46922010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 46890543 - 46890694
Alignment:
| Q |
16 |
atccaacatttttctttataccaatgtctttcatttcctttctgacaacagtggcttcttcccatctgcatttaacaattacaagtatgaccataagagc |
115 |
Q |
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| T |
46890543 |
atccaacatatttcttattaccgttgtctttcattttcttcctgtcaacagtggcttcttcccatctgcatttaacaattacaagcatgaccataagagc |
46890642 |
T |
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| Q |
116 |
tatgataatgtttgagtc--atatgaaagtgacaacatcactttagtttcaa |
165 |
Q |
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| T |
46890643 |
tatgataatgtttgagtcatatatgaaagagacgacatcgctttagtttcaa |
46890694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 46890737 - 46890781
Alignment:
| Q |
322 |
catggtataaaatcaatacctgccagcagatgcaagcatattaga |
366 |
Q |
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|||||| | |||| ||||||||||||||||||||||| ||||||| |
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| T |
46890737 |
catggtttgaaataaatacctgccagcagatgcaagcctattaga |
46890781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 38312754 - 38312592
Alignment:
| Q |
14 |
atatccaacatttttctttataccaatgtctttcatttcctttctgacaacagtggcttcttcccatctgcatttaacaattacaagtatgaccataaga |
113 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38312754 |
atatccaacatttttctttataccaatgtctttcatttcctttctgacaacagtggcttcttcccatctgcatttaacaattacaagtatgaccataaga |
38312655 |
T |
|
| Q |
114 |
gctatgataatgtttgagtcatatgaaagtgacaacatcactttagtttcaactagatatgtt |
176 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38312654 |
gctttgataatgtttgagtcatatgaaagtgacaacatcactttagtttcaactagatatgtt |
38312592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 272 - 386
Target Start/End: Complemental strand, 38312281 - 38312167
Alignment:
| Q |
272 |
ctatcaattcatttaactaaccaaggcaattcaagaaggaaaattaataacatggtataaaatcaatacctgccagcagatgcaagcatattagaaagca |
371 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38312281 |
ctatcaattcatctaactaagcaaggcaattcaagaaggaaaattaataacatggtttaaaatcaatacctgccagcagatgcaagcatattagaaagca |
38312182 |
T |
|
| Q |
372 |
ctacatggttgccag |
386 |
Q |
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||||||||||||||| |
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| T |
38312181 |
ctacatggttgccag |
38312167 |
T |
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