View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_41 (Length: 395)
Name: NF16569_low_41
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 35684711 - 35685070
Alignment:
| Q |
18 |
ctcactcgagaaagaattaccgttgcgcatggacatcaaaccttttcaacactttgtcatgaggcccttatgcatgctagaatcatgggatacaaggttg |
117 |
Q |
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| T |
35684711 |
ctcactcgagaaagaattaccgttgtgcatggacatcaaaccttttcaacactttgtcatgaggcccttatgcatgctagaatcatgggatacaaggttg |
35684810 |
T |
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| Q |
118 |
tgtttaccgatcattccttgaatggttttagtgatgctggaagtatacacatgaacaaggttttgcagtttaccttggcagatgtgagtcaggctatatg |
217 |
Q |
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| T |
35684811 |
tgtttaccgatcattccttgaatggttttagtgatgctggaagtatacacatgaacaaggttttgcagtttaccttggcagatgtgagtcaggctatatg |
35684910 |
T |
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| Q |
218 |
tgtttctcatacaagtaaggagaacacggttttgaggtcgggtttggcgccggagaaggtttttgtaatacctaatgctgttgacactgccaagtttaag |
317 |
Q |
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| T |
35684911 |
tgtttctcatacaagtaaggagaacacggttttgaggtcgggtttggcgccggagaaggtttttgtaatacctaatgctgttgacactgccaagtttaag |
35685010 |
T |
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| Q |
318 |
ccaatgtcggaggaggagcgccgtagttctaaacctagtagatccgaaattgttattgtt |
377 |
Q |
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| T |
35685011 |
ccaatgtcggaggaggagcgccgtagttctaaacctagtagatccgaaattgttattgtt |
35685070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 23 - 301
Target Start/End: Complemental strand, 40672426 - 40672148
Alignment:
| Q |
23 |
tcgagaaagaattaccgttgcgcatggacatcaaaccttttcaacactttgtcatgaggcccttatgcatgctagaatcatgggatacaaggttgtgttt |
122 |
Q |
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| T |
40672426 |
tcgagaaagaattacagtggtgcatggacaccaagccttttcgacattttgtcatgaaactctcatgcatgcaagaaccatgggatacaaggttgtgttt |
40672327 |
T |
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| Q |
123 |
accgatcattccttgaatggttttagtgatgctggaagtatacacatgaacaaggttttgcagtttaccttggcagatgtgagtcaggctatatgtgttt |
222 |
Q |
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|| |||||||| || | |||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||||| ||| || |||||||||| |
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| T |
40672326 |
acagatcattctctgtacggttttgctgatgctggaagcattcacatgaacaaggtgttgcagtttaccttggcagatgtgactcaagccatatgtgttt |
40672227 |
T |
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| Q |
223 |
ctcatacaagtaaggagaacacggttttgaggtcgggtttggcgccggagaaggtttttgtaatacctaatgctgttga |
301 |
Q |
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| T |
40672226 |
ctcacacaagcaaggaaaacacagtgttacggtcaggtttgccaccagataaagtttttgtaatacctaatgccgttga |
40672148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 20685546 - 20685601
Alignment:
| Q |
19 |
tcactcgagaaagaattaccgttgcgcatggacatcaaaccttttcaacactttgt |
74 |
Q |
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| T |
20685546 |
tcactcgagaaagaattaccgttgtgcatggacatcaaaccttttcaacactttgt |
20685601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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