View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_44 (Length: 381)
Name: NF16569_low_44
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 26610605 - 26610960
Alignment:
| Q |
11 |
cacagaaagagattaataatttgattgccacgagggagacaatgcctagaaaaccgcaagacacttgaaagccctgttatgaaaactgactcaacatgca |
110 |
Q |
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| T |
26610605 |
cacagaaagagattaataatttgattgccacgagggagacaatgcctagaaaaccgcaagacacttgaaagccctgttatgaaaactgactcaacatgca |
26610704 |
T |
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| Q |
111 |
ccaaatggaccacacaccatgagctataggccatacttccggttaacacgctgccaaatctagccacactccacctctcatctttaaaaagcttcaccat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26610705 |
ccaaatggaccacacaccatgagctataggccatacttccggttaacacgctgccaaatctagccacactccacctctcatctttaaaaagcttcaccat |
26610804 |
T |
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| Q |
211 |
ttaagacattcacttcactcacaaacattttgtaccaccaagctttctttgtataacaagtacgtagtaattgatgtcttgcatgtatttatggacatgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26610805 |
ttaagacattcacttcactcacaaacattttgtaccaccaagctttctttgtataacaagtacgtagtaattgatgtcttgcatgtatttatggacatgt |
26610904 |
T |
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| Q |
311 |
ctgtttactattgtttgcatggtattttgctactgagttttgtactatgtacttat |
366 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
26610905 |
ctgtttactattgtttgcatggtattttgctactaagctttgtactatgtacttat |
26610960 |
T |
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