View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16569_low_45 (Length: 380)
Name: NF16569_low_45
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_45 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 40962159 - 40961894
Alignment:
| Q |
1 |
gaattggagttgttagaatgagaaagtgttggtttgttggagtgttgtttgtggtggcatatggaagcttgttggtagaagggtacccaattgaagatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40962159 |
gaattggagttgttagaatgagaaagtgttggtttgttggagtgttgtttgtggtggcatatggaagcttgttggtagaagggtacccaattgaagatct |
40962060 |
T |
|
| Q |
101 |
agttgtgaagctaccaggccaacccaaagttaaattcagtcaatatgctggttatgttgatatagatataaaacatgggaggagtctcttctattatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40962059 |
agttgtgaagctaccaggccaacccaaagttaaattcagtcaatatgctggttatgttgatatagatataaaacatgggaggagtctcttctattatttt |
40961960 |
T |
|
| Q |
201 |
gttgaggctgaccatctccctcacaaaaagcctctcaccctatggctcaatggaggtaataataat |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40961959 |
gttgaggctgaccatctccctcacaaaaagcctctcaccctatggctcaatggaggtaataataat |
40961894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 74 - 263
Target Start/End: Original strand, 40971646 - 40971835
Alignment:
| Q |
74 |
ggtagaagggtacccaattgaagatctagttgtgaagctaccaggccaacccaaagttaaattcagtcaatatgctggttatgttgatatagatataaaa |
173 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| | ||||||||||| || ||| |||||| ||||||||||| ||| ||||||||||| ||| |
|
|
| T |
40971646 |
ggtagaagggtacccaattgaagatttcattgtgaagttgccaggccaacctaaggttgaattcaaacaatatgctggctatattgatatagatgtaagg |
40971745 |
T |
|
| Q |
174 |
catgggaggagtctcttctattattttgttgaggctgaccatctccctcacaaaaagcctctcaccctatggctcaatggaggtaataat |
263 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40971746 |
catgggagaagcctcttctattattttgttgaggctgatcatgaccctcacaaaaagcctctcaccctttggctcaatggaggtaataat |
40971835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 78 - 267
Target Start/End: Complemental strand, 30907045 - 30906855
Alignment:
| Q |
78 |
gaagggtacccaattgaagatctagttgtgaagctaccaggccaacccaaagttaaattcagtcaatatgctggttatgttgatatagatataaaacatg |
177 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| | || ||||| ||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
30907045 |
gaagggtaccctattgaggatctggttgttagtcttccaggtcaacctaaagttgaattcagtcaatatgctggttatgttgatattgatgtaaaacatg |
30906946 |
T |
|
| Q |
178 |
ggaggagtctcttctattattttgttgaggctgaccatctccctcacaaaaagcctctcaccctatggctcaatggaggt-aataataatt |
267 |
Q |
| |
|
| || || | || |||||||||||||| ||||| ||| ||||| || || || ||||| || ||||||||||||||| |||||||||| |
|
|
| T |
30906945 |
gtagaagcttgttttattattttgttgaagctgatcataaacctcaaaataaacccctcactctttggctcaatggaggtaaataataatt |
30906855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University