View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_49 (Length: 361)
Name: NF16569_low_49
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 41081347 - 41081026
Alignment:
| Q |
18 |
atgaatcagaaaatacaaacaccaatgcagttccaaaaccaaatcttctacgcgtcaaagaaaattctcattcttgcacattgaggttccatgaatcttg |
117 |
Q |
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| T |
41081347 |
atgaatcagaaaatacaaacaccaatgcagttccaaaaccaaatcttttacgcgtcaaagaaaattctcattcttgcacattgaggttccatgaatcttg |
41081248 |
T |
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| Q |
118 |
cagctccaatcacttatttctaccaatcctgagcaagacaatatgacataactaaggtctcaattgcctaagccaccatagataatgaaagaccaatcta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41081247 |
cagctccaatcacttatttctaccaatcctgagcaagacaatatgacataacaaaggtctcaattgcctaagccaccatagataatgaaagaccaatcta |
41081148 |
T |
|
| Q |
218 |
aagttagttttaacattaggcatgagtagaaccatattaattggtaagggatatgctatgattttgattggttaaaatgccatttcctgtcaagaaacga |
317 |
Q |
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| T |
41081147 |
aagttagttttaacattaggcatgagtagaaccat----attggtaagggatatgctatgattttgattggttaaaatgccatttcctgtcaagaaacga |
41081052 |
T |
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| Q |
318 |
cataacacccctacttatcatactcc |
343 |
Q |
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|||||| ||||||||||||||||||| |
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| T |
41081051 |
cataacccccctacttatcatactcc |
41081026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 124 - 343
Target Start/End: Complemental strand, 41089251 - 41089036
Alignment:
| Q |
124 |
caatcacttatttctaccaatcctgagcaagacaatatgacataactaaggtctcaattgcctaagccaccatagataatgaaagaccaatctaaagtta |
223 |
Q |
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| T |
41089251 |
caatcacatatttctaccaatcctaagcaagacaatatgacataactaaagtctcaattgcctaagccaccatagataacgaaagaccaatctaaaggta |
41089152 |
T |
|
| Q |
224 |
gttttaacattaggcatgagtagaaccatattaattggtaagggatatgctatgattttgattggttaaaatgccatttcctgtcaagaaacgacataac |
323 |
Q |
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|||||||||||| |||||| ||||||||| | |||||||||||| |||||||||| |||| |||||||||||||||||||||||||||| |||| | |
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| T |
41089151 |
gttttaacattatgcatgactagaaccat----aatggtaagggataagctatgatttagattcgttaaaatgccatttcctgtcaagaaaccacatcag |
41089056 |
T |
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| Q |
324 |
acccctacttatcatactcc |
343 |
Q |
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||||| ||||||| ||||| |
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| T |
41089055 |
accccggcttatcaaactcc |
41089036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 121 - 320
Target Start/End: Complemental strand, 41103642 - 41103435
Alignment:
| Q |
121 |
ctccaatcacttatttctaccaatcctgagcaagacaatatgacataactaaggtctcaattgcct-------------aagccaccatagataatgaaa |
207 |
Q |
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||||||||||||||||| ||||||||| ||||||||| ||| || | ||||||||||||||||||| |||||||||||||||| |||| |
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| T |
41103642 |
ctccaatcacttatttcgaccaatcctaagcaagacagtataactttactaaggtctcaattgccttattatacacagcaagccaccatagataacgaaa |
41103543 |
T |
|
| Q |
208 |
gaccaatctaaagttagttttaacattaggcatgagtagaaccatattaattggtaagggatatgctatgattttgattggttaaaatgccatttcctgt |
307 |
Q |
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| T |
41103542 |
ggccaatttaaaggtagtttcaacattatgcatgagtagaatcat----attggtaacggataagctatgattttaattggttaaaatggcattt-ctgt |
41103448 |
T |
|
| Q |
308 |
caagaaacgacat |
320 |
Q |
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|||||||| |||| |
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| T |
41103447 |
caagaaaccacat |
41103435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 41089359 - 41089292
Alignment:
| Q |
48 |
ttccaaaaccaaatcttctacgcgtcaa-agaaaattctcattcttgcacattgaggttccatgaatc |
114 |
Q |
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||||||||||||||||||||||| |||| | |||||||||||||||||| ||| |||| |||||||| |
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| T |
41089359 |
ttccaaaaccaaatcttctacgcctcaacaaaaaattctcattcttgcatattaaggtcacatgaatc |
41089292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 41103707 - 41103664
Alignment:
| Q |
84 |
ctcattcttgcacattgaggttccatgaatcttgcagctccaat |
127 |
Q |
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| T |
41103707 |
ctcattgttgcacattgaggtcccatgaatcttgcagctccaat |
41103664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 4132197 - 4132286
Alignment:
| Q |
38 |
accaatgcagttccaaaaccaaatcttctacgcgtcaaagaaaattctcattcttgcacattgaggttccatgaatcttgcagctccaat |
127 |
Q |
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|||||| |||||||||||||||||||||||||| |||| |||| ||||||| |||| |||||||| ||||||||| || ||||||||| |
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| T |
4132197 |
accaatacagttccaaaaccaaatcttctacgcctcaacaaaaagtctcattgctgcatattgaggtcccatgaatcatgtagctccaat |
4132286 |
T |
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