View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_5 (Length: 700)
Name: NF16569_low_5
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 617; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 21 - 677
Target Start/End: Original strand, 4306975 - 4307631
Alignment:
| Q |
21 |
agagaatcactcaacaaagttacaaagttaagtgtctgatgccaatgaaaaaagcacaccaaatgaaataatgaaaagtgagctattctctatattcatc |
120 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
4306975 |
agagaatcactcaacaaagttacaaagttaagtgtctaatgccaatgaaaaaagcacaccaaactaaataatgaaaagtgagctagtctctatattcatc |
4307074 |
T |
|
| Q |
121 |
aggcaaccttcattaaaattttatcagttacacgagccaacaaaaacgttttatctgtcagacaaccttcaaagcctcttaataagaaaattgccactta |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4307075 |
aggcaaccttcattaaaattttatcagttacacgagccaacaaaaacgttttatctgtcagacaaccttcaaagcctcttaataagaaaattgccactta |
4307174 |
T |
|
| Q |
221 |
ttatatctaccatttactcctactaattcaccaactgaaaatcatttactcttacgtcattcatgctttaggttcgttactctcttatcagtctgcagat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4307175 |
ttatatctaccatttactcctactaattcaccaactgaaaatcatttactcttacgtcattcatgctttaggttcgttactctcttatcagtctgcagat |
4307274 |
T |
|
| Q |
321 |
cagattgtgaaaatataagattgaatctccatagaatggaaaagagaggaaaattttctatgaacttggaaacaaagcattgaaatgtagagaattctat |
420 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4307275 |
cagattgtgaaaatataagattgaatctctatagaatggaaaagagaggaaaattttctatgaacttggaaacaaagcattgaaatgtagagaattctat |
4307374 |
T |
|
| Q |
421 |
tcacaaatcttagtctttacaattctgagatacacttatttatactatgctatgtacctcacaagcttaactatagttagttgtttaactataactaact |
520 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4307375 |
tcacaaatcttagtctttacaatactgagatacacttatttatactatgctatgtacctcacaagcttaactatagttagttgtttaactataactaact |
4307474 |
T |
|
| Q |
521 |
attgtaacttccataactgtcaaaacagttagttagttactagactctgcaattacttgttacacaagcaattgtcttaagctaatatctaatcaaactt |
620 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4307475 |
attgtaacttccataactgtcaaaagagttagttagttactagactctgcaattacttgttacacaagtaattgtcttaagctaatatctaatcaaactt |
4307574 |
T |
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| Q |
621 |
taacacagatactcattttctaaactcagaatcatccttcccaactcacccaccatc |
677 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
4307575 |
taacacagatactcattttctacactcagaatcatcctccccaactcacccaccatc |
4307631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 550 - 613
Target Start/End: Original strand, 27031552 - 27031614
Alignment:
| Q |
550 |
tagttagttactagactctgcaattacttgttacacaagcaattgtcttaagctaatatctaat |
613 |
Q |
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||||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||| |
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| T |
27031552 |
tagttagttactagactgtgcaattacttgttacacaagtaattgtc-taagttaatatctaat |
27031614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 559 - 625
Target Start/End: Complemental strand, 27073356 - 27073291
Alignment:
| Q |
559 |
actagactctgcaattacttgttacacaagcaattgtcttaagctaatatctaatcaaactttaaca |
625 |
Q |
| |
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|||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||| | ||||||||| |
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| T |
27073356 |
actagactgtgcaattacttgttacacaagtaattgtc-taagttaatatctaattacactttaaca |
27073291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 596
Target Start/End: Original strand, 26991641 - 26991687
Alignment:
| Q |
550 |
tagttagttactagactctgcaattacttgttacacaagcaattgtc |
596 |
Q |
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||||||||||||||||| ||||||||||||||| ||| | ||||||| |
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| T |
26991641 |
tagttagttactagactgtgcaattacttgttagacaggtaattgtc |
26991687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 452 - 559
Target Start/End: Complemental strand, 33306355 - 33306248
Alignment:
| Q |
452 |
acacttatttatactatgctatgtacctcacaagcttaactatagttagttgtttaactataactaactattgtaacttccataactgtcaaaacagtta |
551 |
Q |
| |
|
||||||||||||||||| ||| ||||| ||| |||||||||||||||||| |||||||||||| || |||| |||| |||||||||||||| ||||||| |
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| T |
33306355 |
acacttatttatactattctaagtacccaacacgcttaactatagttagttatttaactataaccaattattataacatccataactgtcaagacagtta |
33306256 |
T |
|
| Q |
552 |
gttagtta |
559 |
Q |
| |
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|||||||| |
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| T |
33306255 |
gttagtta |
33306248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 26650152 - 26650097
Alignment:
| Q |
23 |
agaatcactcaacaaagttacaaagttaagtgtctgatgccaatgaaaaaagcaca |
78 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||| |||| |||| || ||||||| |
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|
| T |
26650152 |
agaatcactctacaaagttacaaagataagtgtctaatgctaatgtaagaagcaca |
26650097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 326 - 406
Target Start/End: Complemental strand, 30868896 - 30868816
Alignment:
| Q |
326 |
tgtgaaaatataagattgaatctccatagaatggaaaagagaggaaaattttctatgaacttggaaacaaagcattgaaat |
406 |
Q |
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||||||||||||||||||||||||| |||| | ||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
30868896 |
tgtgaaaatataagattgaatctccttagagtagaaaagaaaggaaaatttgctatgaacttggaaacaaagcattgaaat |
30868816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 18096364 - 18096436
Alignment:
| Q |
483 |
aagcttaactatagttagttgtttaactataactaactattgtaacttccataactgtcaaaacagttagttagtt |
558 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
18096364 |
aagcttaactatagttagttatttaactataactaac---tgtaacttccataacagtcaaaacagttagttagtt |
18096436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 14161587 - 14161498
Alignment:
| Q |
23 |
agaatcactcaacaaagttacaaagttaagtgtctgatgccaatgaaaaaagcacaccaaatgaaataatgaaaagtgagctattctcta |
112 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |||||| |||||| |
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| T |
14161587 |
agaatcactctacaaagatataaagttaagtgtctgatgccaatgaaaaaagcacaacaaacgaaataattaaaagagagctagtctcta |
14161498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 39011543 - 39011486
Alignment:
| Q |
21 |
agagaatcactcaacaaagttacaaagttaagtgtctgatgccaatgaaaaaagcaca |
78 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||||| ||||||||| || ||||||| |
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|
| T |
39011543 |
agagaatcactctacaaagttacaaagataagtgtctaatgccaatggaagaagcaca |
39011486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 596
Target Start/End: Original strand, 34693899 - 34693945
Alignment:
| Q |
550 |
tagttagttactagactctgcaattacttgttacacaagcaattgtc |
596 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||| | ||||||| |
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|
| T |
34693899 |
tagttagttactagactgtgcaattacttgttagacaggtaattgtc |
34693945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 51073332 - 51073288
Alignment:
| Q |
21 |
agagaatcactcaacaaagttacaaagttaagtgtctgatgccaa |
65 |
Q |
| |
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|||||| | ||| |||||||||||||||||||||||| ||||||| |
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|
| T |
51073332 |
agagaacctctcgacaaagttacaaagttaagtgtctaatgccaa |
51073288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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