View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16569_low_58 (Length: 335)

Name: NF16569_low_58
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16569_low_58
NF16569_low_58
[»] chr6 (3 HSPs)
chr6 (9-108)||(7561461-7561560)
chr6 (224-319)||(7561179-7561274)
chr6 (108-187)||(7561341-7561420)


Alignment Details
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 7561560 - 7561461
Alignment:
Q  9 agatgaagaaagcgcaaaaccaaaaatttcctcctatcttgtctaatcctattgagaagaaactatttgaactttctcacgtgatttgaggacaagacaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7561560 agatgaagaaagcgcaaaaccaaaaatttcctcctatcttgtctaatcctattgagaagaaactatttgaactttctcacgtgatttgaggacaagacaa 7561461  T

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Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 224 - 319
Target Start/End: Complemental strand, 7561274 - 7561179
Alignment:
Q  224 gagagggtagagttggatagaaagttgaacatgtattttaggaatttatgaacctttttaggttgaaaatgtatggaccactttttggaatatatg 319  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7561274 gagagggtcgagttggatagaaagttgaacatgtattttaggaatttatgaacctttttaggttgaaaatgtatggaccactttttggaatatatg 7561179  T

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Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 7561420 - 7561341
Alignment:
Q  108 aagaaaccaccggtggtaccagaagtgctagtttttgttgttgttgataatgaggagtctgcaaatattgataaaatggg 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7561420 aagaaaccaccggtggtaccagaagtgctagtttttgttgttgttgataatgaggagtctgcaaatattgataaaatggg 7561341  T

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