View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16569_low_6 (Length: 654)

Name: NF16569_low_6
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16569_low_6
NF16569_low_6
[»] chr1 (9 HSPs)
chr1 (261-477)||(51220725-51220941)
chr1 (484-633)||(51220995-51221144)
chr1 (1-132)||(51220559-51220690)
chr1 (552-607)||(51762779-51762834)
chr1 (553-603)||(51756604-51756654)
chr1 (288-337)||(51756321-51756370)
chr1 (553-606)||(51858756-51858809)
chr1 (481-509)||(23898458-23898486)
chr1 (481-509)||(51762699-51762727)
[»] chr6 (2 HSPs)
chr6 (553-605)||(4182849-4182901)
chr6 (553-605)||(4743693-4743745)
[»] chr3 (2 HSPs)
chr3 (481-514)||(1438224-1438257)
chr3 (481-509)||(783602-783630)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 261 - 477
Target Start/End: Original strand, 51220725 - 51220941
Alignment:
Q  261 actagattcagtaattgttaactacataaaatgtaatgcttgatgacaaaaccaataactctaacaaacaaataaattaacacagaaatttcaaaagcaa 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51220725 actagattcagtaattgttaactacataaaatgtaatgcttgatgacaaaaccaataactctaacaaacaaataaattaacacagaaatttcaaaagcaa 51220824  T
Q  361 catactcaatagaccataaattaaaaataactcatgaagttaacaataacgagaactaatataaaataaataacaagatcatttcatcgaagaaaaagac 460  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51220825 cagactcaatagaccataaattaaaaataactcatgaagttaacaataacgagaactaatataaaataaataacaagatcatttcatcgaagaaaaagac 51220924  T
Q  461 gagtctctaggctgcag 477  Q
    |||||||||||||||||    
T  51220925 gagtctctaggctgcag 51220941  T

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Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 484 - 633
Target Start/End: Original strand, 51220995 - 51221144
Alignment:
Q  484 tgatatcaaactctcaacgtagacttgtggtggtgccattttatcattgttgttgttttgaattattgtaggaatcttaaatgtattatttatggaatca 583  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51220995 tgatatcaaactcttaacgtagacttgtggtggtgccattttatcattgttgttgttttgaattattgtaggaatcttaaatgtattatttatggaatca 51221094  T
Q  584 tagataaccaaactaaatttccccgaagatataaactccattagcacttg 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51221095 tagataaccaaactaaatttccccgaagatataaactccattagcacttg 51221144  T

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Target: chr1; HSP #3
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 51220559 - 51220690
Alignment:
Q  1 caaatcagttcaattgatgcaacatgcgatgatcacaaacaattacttgcatcagaagttattacatgcaagaacacattagataggtgcaaattagtgt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51220559 caaatcagttcaattgatggaacatgcgatgatcacaaacaattacttgcatcagaagttattacatgcaagaacacattagataggtgcaaattagtgt 51220658  T
Q  101 agcttagcttttcctttaccccgtatgattta 132  Q
    ||||||||||||||||||||||||||||||||    
T  51220659 agcttagcttttcctttaccccgtatgattta 51220690  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 552 - 607
Target Start/End: Original strand, 51762779 - 51762834
Alignment:
Q  552 taggaatcttaaatgtattatttatggaatcatagataaccaaactaaatttcccc 607  Q
    ||||||||||||| |||| |||||||||| |||||| |||||||||||||||||||    
T  51762779 taggaatcttaaaagtatcatttatggaaccatagacaaccaaactaaatttcccc 51762834  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 553 - 603
Target Start/End: Original strand, 51756604 - 51756654
Alignment:
Q  553 aggaatcttaaatgtattatttatggaatcatagataaccaaactaaattt 603  Q
    |||||||||||| |||| ||||||||||||||||| | |||||||||||||    
T  51756604 aggaatcttaaaagtatcatttatggaatcatagaaagccaaactaaattt 51756654  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 51756321 - 51756370
Alignment:
Q  288 aaaatgtaatgcttgatgacaaaaccaataactctaacaaacaaataaat 337  Q
    |||||||||||| ||||||||||| ||| ||||||||| |||||||||||    
T  51756321 aaaatgtaatgcatgatgacaaaatcaacaactctaactaacaaataaat 51756370  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 553 - 606
Target Start/End: Complemental strand, 51858809 - 51858756
Alignment:
Q  553 aggaatcttaaatgtattatttatggaatcatagataaccaaactaaatttccc 606  Q
    ||||||||| ||||||| ||| ||||||||||||| | |||| |||||||||||    
T  51858809 aggaatcttcaatgtatcattaatggaatcatagacagccaacctaaatttccc 51858756  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 509
Target Start/End: Original strand, 23898458 - 23898486
Alignment:
Q  481 aggtgatatcaaactctcaacgtagactt 509  Q
    |||||||||||||||||||||||||||||    
T  23898458 aggtgatatcaaactctcaacgtagactt 23898486  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 509
Target Start/End: Original strand, 51762699 - 51762727
Alignment:
Q  481 aggtgatatcaaactctcaacgtagactt 509  Q
    |||||||||||||||||||||||||||||    
T  51762699 aggtgatatcaaactctcaacgtagactt 51762727  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 553 - 605
Target Start/End: Original strand, 4182849 - 4182901
Alignment:
Q  553 aggaatcttaaatgtattatttatggaatcatagataaccaaactaaatttcc 605  Q
    |||||||||| | |||| ||||||||||||||||| | |||||||||||||||    
T  4182849 aggaatcttataagtatcatttatggaatcatagacagccaaactaaatttcc 4182901  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 553 - 605
Target Start/End: Original strand, 4743693 - 4743745
Alignment:
Q  553 aggaatcttaaatgtattatttatggaatcatagataaccaaactaaatttcc 605  Q
    |||||||||| | |||| ||||||||||||||||| | |||||||||||||||    
T  4743693 aggaatcttataagtatcatttatggaatcatagacagccaaactaaatttcc 4743745  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 514
Target Start/End: Complemental strand, 1438257 - 1438224
Alignment:
Q  481 aggtgatatcaaactctcaacgtagacttgtggt 514  Q
    ||||||||||||||||||||||||||||| ||||    
T  1438257 aggtgatatcaaactctcaacgtagacttctggt 1438224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 509
Target Start/End: Original strand, 783602 - 783630
Alignment:
Q  481 aggtgatatcaaactctcaacgtagactt 509  Q
    |||||||||||||||||||||||||||||    
T  783602 aggtgatatcaaactctcaacgtagactt 783630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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