View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_61 (Length: 334)
Name: NF16569_low_61
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 34850176 - 34849876
Alignment:
| Q |
16 |
atcatttaaattagtgataatatctttttctcnnnnnnnnnntttaaaataaaatcatatatttggagtttttaatcaattcatgtccgtgagtaaataa |
115 |
Q |
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| T |
34850176 |
atcatttaaattagtgataatatctttttctcaaaaaaaaaatt-aaaataaaatcatatatttggagtttttaatcaattcatgtccgtgagtaaataa |
34850078 |
T |
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| Q |
116 |
ttaatctgcaacttggaagcgctgacaaagtttttgggaagaagctcacttcctccattcacaaacacgtcttcaaatttcaatcacaagtttttgggaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34850077 |
ttaatctgcaacttggaagcgctgacaaagtttttgggaagaagctcacttcctccattcacaaacacgtcttcaaatttcaatcacaagtttttgggaa |
34849978 |
T |
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| Q |
216 |
gataacttcatggctaaggaaaagttagaaattaatatgaaactaaagaaacaatttaaagtaaactaattagtcaaaatcagaaaaatgtggggcatca |
315 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34849977 |
gaaaacttcatggctaaggaaaagttagaaattaatatgaaactaaagaaacaatttaaagtaaactaattagtcaaaatcagaaaaatgtggggcatca |
34849878 |
T |
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| Q |
316 |
at |
317 |
Q |
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|| |
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| T |
34849877 |
at |
34849876 |
T |
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