View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_63 (Length: 329)
Name: NF16569_low_63
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_63 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 39055022 - 39055334
Alignment:
| Q |
17 |
agataatgaagtcatcacactaatttctatctttgctaattattcaggtagaacatgtcagatctgagagaaatctccttgcagaggttgacagcaattg |
116 |
Q |
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| T |
39055022 |
agataatgaagtcatcacactaatttctatctttgctaattattcaggtagaacatgtcagatctgagaggaatctccttgcagaggttgacagcaattg |
39055121 |
T |
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| Q |
117 |
catcgtcaaactttattgttctttccaggatgatgagtatttatatcttattatggagtatctaccgggaggggatatgatgactcttcttatgagaaag |
216 |
Q |
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| T |
39055122 |
catcgtcaaactttattgttctttccaggatgatgagtatttatatcttattatggagtatctaccgggaggggatatgatgactcttcttatgagaaag |
39055221 |
T |
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| Q |
217 |
gatacattaaccgaagacgaagcccgattttatgtaggagaaacagttctggctattgaatctatacataaacacaattatatacacaggtatctctaga |
316 |
Q |
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| T |
39055222 |
gatacattaaccgaagacgaagcccgattttatgtaggagaaacagttctggctattgaatctatacataaacacaattatatacataggtatctctaga |
39055321 |
T |
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| Q |
317 |
attgggcatttac |
329 |
Q |
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| T |
39055322 |
attgggcatttac |
39055334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 62 - 309
Target Start/End: Complemental strand, 30394315 - 30394068
Alignment:
| Q |
62 |
aggtagaacatgtcagatctgagagaaatctccttgcagaggttgacagcaattgcatcgtcaaactttattgttctttccaggatgatgagtatttata |
161 |
Q |
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| T |
30394315 |
aggttgaacatgtcaaagcggaaaggaatctcctcgcagaggttgacagcaattgcattgtcaaactttattgctctttccaggatgacgagtatcttta |
30394216 |
T |
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| Q |
162 |
tcttattatggagtatctaccgggaggggatatgatgactcttcttatgagaaaggatacattaaccgaagacgaagcccgattttatgtaggagaaaca |
261 |
Q |
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| T |
30394215 |
tcttattatggagtatctaccgggtggagatatgatgactctacttatgagaaaggataccttgactgaagatgaagccagattttatgtaggagaaact |
30394116 |
T |
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| Q |
262 |
gttctggctattgaatctatacataaacacaattatatacacaggtat |
309 |
Q |
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| T |
30394115 |
gttctggctattgaatctatacacaagcacaattatatacataggtat |
30394068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 15924148 - 15924010
Alignment:
| Q |
62 |
aggtagaacatgtcagatctgagagaaatctccttgcagaggttgacagcaattgcatcgtcaaactttattgttctttccaggatgatgagtatttata |
161 |
Q |
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|||| |||||||||| | ||||||| || || |||||||| ||||| ||||||||||| || |||||||||||||| || || ||||| ||||||||||| |
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| T |
15924148 |
aggttgaacatgtcaaagctgagaggaaccttcttgcagaagttgatagcaattgcattgtaaaactttattgttcctttcaagatgacgagtatttata |
15924049 |
T |
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| Q |
162 |
tcttattatggagtatctaccgggaggggatatgatgac |
200 |
Q |
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||| || |||||||||||||| || || ||||||||||| |
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| T |
15924048 |
tctcataatggagtatctacccggtggagatatgatgac |
15924010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 15871283 - 15871145
Alignment:
| Q |
62 |
aggtagaacatgtcagatctgagagaaatctccttgcagaggttgacagcaattgcatcgtcaaactttattgttctttccaggatgatgagtatttata |
161 |
Q |
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|||| ||| |||||| |||||| || || || |||||||| ||||| ||||||||||| || |||||||||||||| || || ||||| ||||||||||| |
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| T |
15871283 |
aggttgaatatgtcaaatctgaaaggaaccttcttgcagaagttgatagcaattgcattgtaaaactttattgttcctttcaagatgacgagtatttata |
15871184 |
T |
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| Q |
162 |
tcttattatggagtatctaccgggaggggatatgatgac |
200 |
Q |
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| T |
15871183 |
tctcataatggagtatctacccggtggagatatgatgac |
15871145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 33637635 - 33637529
Alignment:
| Q |
94 |
cttgcagaggttgacagcaattgcatcgtcaaactttattgttctttccaggatgatgagtatttatatcttattatggagtatctaccgggaggggata |
193 |
Q |
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|||||||| ||||||||||||| ||| || || ||||| ||||| || || || || | |||||||||||||| ||||||||||| || || || |||| |
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| T |
33637635 |
cttgcagaagttgacagcaattacattgtaaagctttactgttcctttcaagacgaacattatttatatcttataatggagtatcttcctggtggcgata |
33637536 |
T |
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| Q |
194 |
tgatgac |
200 |
Q |
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| T |
33637535 |
tgatgac |
33637529 |
T |
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