View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16569_low_64 (Length: 329)
Name: NF16569_low_64
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_64 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 314
Target Start/End: Complemental strand, 47267797 - 47267494
Alignment:
| Q |
11 |
cacagaataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatacaacaagtggcgaattg |
110 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47267797 |
cacagcataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatccaacaagtggcgaattg |
47267698 |
T |
|
| Q |
111 |
ttagcattaaacctcgaacgtgcattgacgatacacatcattcgtatctcgtcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatg |
210 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47267697 |
ttagcattaaacctcgaacgtgcattgacaatacacatcattcgtatctcgtcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatg |
47267598 |
T |
|
| Q |
211 |
aagtgataagatcgaatgtggtacaatggcgaaggtgaaatggaaccaagagacgaagcacaactatgtctgaagtcctaaagaagaaagattgatgaac |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47267597 |
aagtgataagatcgaatgtggtacaatggcgaaggtgaaatggaaccaagagacgaagcacaacaatgtctgaagtcctaaagaagaaagattgatgaac |
47267498 |
T |
|
| Q |
311 |
tagg |
314 |
Q |
| |
|
|||| |
|
|
| T |
47267497 |
tagg |
47267494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 47299064 - 47299360
Alignment:
| Q |
17 |
ataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatacaacaagtggcgaattgttagca |
116 |
Q |
| |
|
|||||| |||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||| || |
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|
| T |
47299064 |
ataaccaaatgggtttccacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccgtagtatccaacaagtggcgaattgttaaca |
47299163 |
T |
|
| Q |
117 |
ttaaacctcgaacgtgcattgacgatacacatcattcgtatctcgtcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtga |
216 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47299164 |
ttaaacctcgagcgtgcattggcgatgcacatcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagcga |
47299263 |
T |
|
| Q |
217 |
taagatcgaatgtggtacaatggcgaaggtgaaatggaaccaagagacgaagcacaactatgtctgaagtcctaaagaagaaagattgatgaactag |
313 |
Q |
| |
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|||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||||| |
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| T |
47299264 |
taagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactag |
47299360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 47292457 - 47292753
Alignment:
| Q |
17 |
ataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatacaacaagtggcgaattgttagca |
116 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| |||||||||||||||||||| |
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| T |
47292457 |
ataaccaaatggatttccacaaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcgaattgttaatg |
47292556 |
T |
|
| Q |
117 |
ttaaacctcgaacgtgcattgacgatacacatcattcgtatctcgtcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtga |
216 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47292557 |
ttaaacctcgagcgtgcattgacgacgcacatcattcgtacctctttatccgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagcga |
47292656 |
T |
|
| Q |
217 |
taagatcgaatgtggtacaatggcgaaggtgaaatggaaccaagagacgaagcacaactatgtctgaagtcctaaagaagaaagattgatgaactag |
313 |
Q |
| |
|
||||||| |||||||| || || |||||||||||||||||||||||||||||| || ||||||| |||| ||||||||||||||| |||||||||| |
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| T |
47292657 |
taagatcaaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagcgcagctatgtcagaagctctaaagaagaaagatcgatgaactag |
47292753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 47283756 - 47283508
Alignment:
| Q |
17 |
ataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatacaacaagtggcgaattgttagca |
116 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| |||||||| || |||||| |||||||||| ||||| || ||| ||||||||||||||| || ||| |
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|
| T |
47283756 |
ataacctaaagggtttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagcc |
47283657 |
T |
|
| Q |
117 |
ttaaacctcgaacgtgcattgacgatacacatcattcgtatctcgtcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtga |
216 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||| || ||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
47283656 |
ctaaaccttgaacgtgcattaacgatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgtgcggcaacaccaaaaacatgcggtga |
47283557 |
T |
|
| Q |
217 |
taagatcgaatgtggtacaatggcgaaggtgaaatggaaccaagagacg |
265 |
Q |
| |
|
||||||| ||||| | || || |||||||||||||||| |||| |||| |
|
|
| T |
47283556 |
taagatcaaatgtactgcattgacgaaggtgaaatggaatcaagtgacg |
47283508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 47279163 - 47278925
Alignment:
| Q |
17 |
ataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatacaacaagtggcgaattgttagca |
116 |
Q |
| |
|
||||||||| | |||||||||||||||||||| |||||||| || |||||| |||||||||| ||||| || ||| ||||||||||||||| || ||| |
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|
| T |
47279163 |
ataacctaaaggatttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagcc |
47279064 |
T |
|
| Q |
117 |
ttaaacctcgaacgtgcattgacgatacacatcattcgtatctcgtcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtga |
216 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||| || ||||||| ||||||||||||||||||||| || |||||||||||||||| |||| |
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|
| T |
47279063 |
ctaaaccttgaacgtgcattaacgatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgtacggcaacaccaaaaacatgcggtga |
47278964 |
T |
|
| Q |
217 |
taagatcgaatgtggtacaatggcgaaggtgaaatggaa |
255 |
Q |
| |
|
||||||| ||||| | || || |||||||||||||||| |
|
|
| T |
47278963 |
taagatcaaatgtactgcattgacgaaggtgaaatggaa |
47278925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 47242887 - 47242588
Alignment:
| Q |
17 |
ataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatacaacaagtggcgaattgttagca |
116 |
Q |
| |
|
|||||||||| |||||||||||||| | ||| |||||||| ||||||| | |||||| ||||||||||| ||| |||||| ||| ||||||| |
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|
| T |
47242887 |
ataacctaattggtttccacaaagctcctttgcggtggtgacagccgccgagaaagcaatgcaattaccgtaatatccaacaaacaaagaagggttagca |
47242788 |
T |
|
| Q |
117 |
ttaaacctcgaacgtgcattgacgatacacatcattcgtatctcgtcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtga |
216 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||| ||| ||||||| ||||| |||||||||||||||||| || |||||| || ||| ||||| |
|
|
| T |
47242787 |
ctaaacctggaacgtgcattaacgatgcacatcattcgtacctcttcatctggctctatctgcaatgcttttgtgcggcagcaccaataatatgcagtga |
47242688 |
T |
|
| Q |
217 |
taagatc----gaatgtggtacaatggcgaaggtgaaatggaaccaagagacgaagcacaactatgtctgaagtcctaaagaagaaagattgatgaacta |
312 |
Q |
| |
|
||||||| ||||| || ||||| ||||||||| |||||||||| ||||| |||| |||||| | || | ||||||||||||||||| |||| |
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|
| T |
47242687 |
taagatcaaattaatgtagtgcaatgatgaaggtgaattggaaccaagcaacgaatcacagctatgtgagcaggtgtgaagaagaaagattgatggacta |
47242588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 47257014 - 47256804
Alignment:
| Q |
17 |
ataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatacaacaagtggcgaa---ttgtta |
113 |
Q |
| |
|
|||||||||| |||||||||||||| | ||| |||||||| ||||||| | |||||| ||| || || || ||| ||| || | |||| || ||| |
|
|
| T |
47257014 |
ataacctaattggtttccacaaagctcctttgcggtggtgactgccgccgagaaagcaatacagttgccataatatccaatgagcgacgaacggttatta |
47256915 |
T |
|
| Q |
114 |
gcattaaacctcgaacgtgcattgacgatacacatcattcgtatctcgtcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaag |
213 |
Q |
| |
|
||| |||||||||| |||||||| ||||| ||||||||||| | || ||||||| |||| |||||||||||||||||| || |||||| |||||| || |
|
|
| T |
47256914 |
gcactaaacctcgagcgtgcattaacgatgcacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcag |
47256815 |
T |
|
| Q |
214 |
tgataagatcg |
224 |
Q |
| |
|
||||||||||| |
|
|
| T |
47256814 |
tgataagatcg |
47256804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 32731554 - 32731311
Alignment:
| Q |
17 |
ataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatacaacaagtggcgaattgttagca |
116 |
Q |
| |
|
|||||||||| |||||||||||||| | ||| |||||||| ||||||| | |||||| |||||||||||| ||| ||| || ||| ||||||| |
|
|
| T |
32731554 |
ataacctaattggtttccacaaagctcctttgcggtggtgacagccgccgagaaagcaatacaattaccgtaatatccaataaacaaagaagggttagca |
32731455 |
T |
|
| Q |
117 |
ttaaacctcgaacgtgcattgacgatacacatcattcgtatctcgtcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtga |
216 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||| ||| ||||||| ||||| |||||||||||||||||| || |||||| |||||| | ||| |
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|
| T |
32731454 |
ctaaacctggaacgtgcattaacgatgcacatcattcgtacctcttcatctggctctatctgcaatgcttttgtgcggcagcaccaataacatgcactga |
32731355 |
T |
|
| Q |
217 |
taagatcgaatgtggtacaatggcgaaggtgaaatggaaccaag |
260 |
Q |
| |
|
||||||| ||||| || ||||| ||||||||| |||||||||| |
|
|
| T |
32731354 |
taagatcaaatgtagtgcaatgatgaaggtgaattggaaccaag |
32731311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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