View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16569_low_66 (Length: 328)

Name: NF16569_low_66
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16569_low_66
NF16569_low_66
[»] chr5 (1 HSPs)
chr5 (10-328)||(4293069-4293386)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 4293069 - 4293386
Alignment:
Q  10 agaagaaggctagataacaagagcatacagtcaaagtttatgatcacacgatttaattaagatcacgtattttaagtgtcggctagtagatatcgtttaa 109  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4293069 agaagaaggctagataacaagagcacacagtcaaagtttataatcacacgacttaattaagatcacgtattttaagtgtcggctagtagatatcgtttaa 4293168  T
Q  110 atttcctctaatagtggtaaaaattatccttgtttacacnnnnnnncttgcacaacattaattcaatcaataagtaacgtttaaagcgtctacaagaatt 209  Q
    |||||||||||||||||||||||||||||| ||||||||       |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4293169 atttcctctaatagtggtaaaaattatcctagtttacactttttttcttgcacaacattaattcaatcaataagtaacgtttaaagcgcctacaagaatt 4293268  T
Q  210 atgtgcataggcatgcagaaactctcctaaaatttatgaatttagcgtacgtgagctgtctgagttaggtgaataattccaagagaaacatggatgataa 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  4293269 atgtgcataggcatgcagaaactctcctaaaatttatgaatttagcgtacgtgagctgtctgagttaggtgaataattccaacagaaacatggatgat-a 4293367  T
Q  310 tactgatatttttggtgaa 328  Q
    |||| ||||||||||||||    
T  4293368 tactaatatttttggtgaa 4293386  T

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