View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16569_low_70 (Length: 317)

Name: NF16569_low_70
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16569_low_70
NF16569_low_70
[»] chr4 (9 HSPs)
chr4 (165-310)||(36090548-36090693)
chr4 (18-162)||(36090730-36090874)
chr4 (205-310)||(21482414-21482519)
chr4 (182-310)||(36107659-36107787)
chr4 (57-166)||(21482236-21482345)
chr4 (178-283)||(34971885-34971990)
chr4 (22-162)||(36100213-36100347)
chr4 (178-310)||(36100396-36100528)
chr4 (110-162)||(36107554-36107606)
[»] chr6 (2 HSPs)
chr6 (178-310)||(6838416-6838548)
chr6 (106-162)||(6838311-6838367)
[»] chr2 (2 HSPs)
chr2 (178-310)||(8338280-8338412)
chr2 (57-155)||(8338126-8338224)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 165 - 310
Target Start/End: Complemental strand, 36090693 - 36090548
Alignment:
Q  165 aaaggatagttcccatgtccaagtaacagttaaatgtgctaaaagtaacaacattcagatcagaattcaaagtggcggacacgactacgaaggtttatca 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||    
T  36090693 aaaggatagttcccatgtccaagtaacagttaaatgtgctaaaagtaacaacattcagatcagaattcgaagtggcggacatgattacgaaggtttatca 36090594  T
Q  265 tatgtataagacgtgccttatgttataattgacttgcttcatctca 310  Q
     |||||| |||| |||||||||||||||||||||||||||||||||    
T  36090593 aatgtatcagacatgccttatgttataattgacttgcttcatctca 36090548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 36090874 - 36090730
Alignment:
Q  18 atctcccattcaaaattttctcacttgtttttctaattattctcaatcttggaattcccctgtttctgacatcatttacagtcaaaagaacacctcattc 117  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| |||||| ||||||||||||    
T  36090874 atctcccatttaaaattttctcacttgtttttctcattattctcaatctttgaattcccatgtttctgacatcatttacactcaaaacaacacctcattc 36090775  T
Q  118 ttaaccatcctcaacatgaaaatacacaacaagagattcaaaaca 162  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||    
T  36090774 ttaaccatcttcaacatgaaaatacattacaagagattcaaaaca 36090730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 21482414 - 21482519
Alignment:
Q  205 aaaagtaacaacattcagatcagaattcaaagtggcggacacgactacgaaggtttatcatatgtataagacgtgccttatgttataattgacttgcttc 304  Q
    ||||||||||| |||||||||||||| | ||||||||| |||||||  |||||||| |||||||||| ||||||||||| ||||||||||||||||||||    
T  21482414 aaaagtaacaaaattcagatcagaatccgaagtggcggccacgactttgaaggtttctcatatgtatcagacgtgccttttgttataattgacttgcttc 21482513  T
Q  305 atctca 310  Q
    ||||||    
T  21482514 atctca 21482519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 182 - 310
Target Start/End: Original strand, 36107659 - 36107787
Alignment:
Q  182 tccaagtaacagttaaatgtgctaaaagtaacaacattcagatcagaattcaaagtggcggacacgactacgaaggtttatcatatgtataagacgtgcc 281  Q
    |||||| |||| |||||||||| ||||| |||||||||||||| ||||||| ||||||||| |||||||| |||||||| |||||||||| ||| |||||    
T  36107659 tccaagaaacaattaaatgtgccaaaagcaacaacattcagattagaattcgaagtggcggtcacgactatgaaggtttttcatatgtatcagatgtgcc 36107758  T
Q  282 ttatgttataattgacttgcttcatctca 310  Q
    || | ||||| ||||| || |||||||||    
T  36107759 ttttattatacttgacatgtttcatctca 36107787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 166
Target Start/End: Original strand, 21482236 - 21482345
Alignment:
Q  57 ttctcaatcttggaattcccctgtttctgacatcatttacagtcaaaagaacacctcattcttaaccatcctcaacatgaaaatacacaacaagagattc 156  Q
    ||||||||||| ||||||| || | ||||| |||||||||| || ||| || | |||||||| |||||||||||||||||||||||| |||||||||||     
T  21482236 ttctcaatctttgaattcctctatctctgatatcatttacactccaaacaatatctcattctcaaccatcctcaacatgaaaatacaaaacaagagattt 21482335  T
Q  157 aaaacaacaa 166  Q
    ||||||||||    
T  21482336 aaaacaacaa 21482345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 283
Target Start/End: Complemental strand, 34971990 - 34971885
Alignment:
Q  178 catgtccaagtaacagttaaatgtgctaaaagtaacaacattcagatcagaattcaaagtggcggacacgactacgaaggtttatcatatgtataagacg 277  Q
    |||||||||| |||| |||||||||| |||||||||||||||||||| ||||||| |||||| || || ||||| ||||||||||||||| ||| ||| |    
T  34971990 catgtccaagcaacaattaaatgtgccaaaagtaacaacattcagataagaattcgaagtggagggcatgactatgaaggtttatcatatttatcagatg 34971891  T
Q  278 tgcctt 283  Q
    ||||||    
T  34971890 tgcctt 34971885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 36100213 - 36100347
Alignment:
Q  22 cccattcaaaattttctcacttgtttttctaattattctcaatcttggaattcccctgtttctgacatcatttacagtcaaaagaacacctcattcttaa 121  Q
    |||||||||||| |||||| |||||||| | |||||||||||||||  |||||       |||||||| |||||| ||| ||| ||| ||||||||| ||    
T  36100213 cccattcaaaatcttctcaattgtttttatcattattctcaatcttttaattca------tctgacattatttacggtccaaaaaacccctcattctcaa 36100306  T
Q  122 ccatcctcaacatgaaaatacacaacaagagattcaaaaca 162  Q
    ||||||| || ||||||||||| ||||||||||| ||||||    
T  36100307 ccatcctaaatatgaaaatacataacaagagatttaaaaca 36100347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 310
Target Start/End: Original strand, 36100396 - 36100528
Alignment:
Q  178 catgtccaagtaacagttaaatgtgctaaaagtaacaacattcagatcagaattcaaagtggcggacacgactacgaaggtttatcatatgtataagacg 277  Q
    |||||||||  |||| |||||||||| ||||  |||||| | ||  | ||||| | ||||||||| ||||| || ||||| || |||||  ||| |||||    
T  36100396 catgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggccacgattatgaaggcttctcatacttatcagacg 36100495  T
Q  278 tgccttatgttataattgacttgcttcatctca 310  Q
    |||||||||||||||||||||||||||| ||||    
T  36100496 tgccttatgttataattgacttgcttcacctca 36100528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 36107554 - 36107606
Alignment:
Q  110 cctcattcttaaccatcctcaacatgaaaatacacaacaagagattcaaaaca 162  Q
    ||||||||| ||| |||||||||||||||||||| || |||||||| ||||||    
T  36107554 cctcattctcaactatcctcaacatgaaaatacaaaataagagatttaaaaca 36107606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 178 - 310
Target Start/End: Original strand, 6838416 - 6838548
Alignment:
Q  178 catgtccaagtaacagttaaatgtgctaaaagtaacaacattcagatcagaattcaaagtggcggacacgactacgaaggtttatcatatgtataagacg 277  Q
    |||||||||| ||||||||||||||| ||||| |||||||||||||| ||||||| |||||| || |||||||| |||||||  |||||||||| ||| |    
T  6838416 catgtccaagaaacagttaaatgtgccaaaagcaacaacattcagattagaattcgaagtggtggtcacgactatgaaggttgttcatatgtatcagatg 6838515  T
Q  278 tgccttatgttataattgacttgcttcatctca 310  Q
    |||||| ||||||| ||||| || |||||||||    
T  6838516 tgccttttgttatacttgacatgtttcatctca 6838548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 6838311 - 6838367
Alignment:
Q  106 aacacctcattcttaaccatcctcaacatgaaaatacacaacaagagattcaaaaca 162  Q
    ||||||||||||| ||| ||||||||||| |||||||| || |||||||| ||||||    
T  6838311 aacacctcattctcaactatcctcaacataaaaatacaaaataagagatttaaaaca 6838367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 178 - 310
Target Start/End: Original strand, 8338280 - 8338412
Alignment:
Q  178 catgtccaagtaacagttaaatgtgctaaaagtaacaacattcagatcagaattcaaagtggcggacacgactacgaaggtttatcatatgtataagacg 277  Q
    |||||||||| |||| |||||||||| ||||| ||||| |||||||| ||||||| ||||||||| |||||||||||||| || || || |||| ||||     
T  8338280 catgtccaagcaacaattaaatgtgccaaaagcaacaatattcagataagaattcgaagtggcggccacgactacgaaggcttctcttacgtatcagaca 8338379  T
Q  278 tgccttatgttataattgacttgcttcatctca 310  Q
    |  ||| ||||||||||||| ||||||| ||||    
T  8338380 tatcttttgttataattgacctgcttcacctca 8338412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 8338126 - 8338224
Alignment:
Q  57 ttctcaatcttggaattcccctgtttctgacatcatttacagtcaaaagaacacctcattcttaaccatcctcaacatgaaaatacacaacaagagatt 155  Q
    ||||||| |||  ||||||||| | |||||  |||||||||  | ||| ||||||||||||| ||||||||| |||||||||||||| |||||||||||    
T  8338126 ttctcaaacttcaaattcccctatctctgaagtcatttacacaccaaacaacacctcattctcaaccatcctaaacatgaaaatacataacaagagatt 8338224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University