View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16569_low_75 (Length: 301)

Name: NF16569_low_75
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16569_low_75
NF16569_low_75
[»] chr8 (4 HSPs)
chr8 (16-248)||(34108820-34109070)
chr8 (85-156)||(29608697-29608765)
chr8 (139-200)||(3693504-3693565)
chr8 (139-200)||(18257480-18257541)
[»] chr3 (3 HSPs)
chr3 (99-200)||(11500468-11500566)
chr3 (86-200)||(36644760-36644875)
chr3 (98-134)||(22516824-22516860)
[»] chr7 (2 HSPs)
chr7 (98-196)||(3404002-3404097)
chr7 (98-135)||(25032825-25032862)
[»] chr4 (1 HSPs)
chr4 (98-200)||(36690225-36690323)
[»] chr1 (6 HSPs)
chr1 (85-200)||(28111467-28111578)
chr1 (110-200)||(24574035-24574122)
chr1 (208-250)||(2758218-2758260)
chr1 (85-130)||(16948925-16948970)
chr1 (85-125)||(2758297-2758337)
chr1 (96-132)||(16904747-16904783)
[»] chr2 (1 HSPs)
chr2 (98-200)||(15545182-15545281)
[»] chr5 (6 HSPs)
chr5 (64-134)||(10912149-10912220)
chr5 (98-195)||(21178305-21178399)
chr5 (98-200)||(25815207-25815306)
chr5 (144-200)||(11783033-11783089)
chr5 (144-200)||(36409577-36409633)
chr5 (83-132)||(11857386-11857435)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 34108820 - 34109070
Alignment:
Q  16 ataatactgcatgcattaaaggagaaaaaagattcacaaaattacaaaaa-ggaatcataaattgatatt----------------ttttgtcaatcgga 98  Q
    |||| ||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||                |||||||||| | |    
T  34108820 ataacactgcatgcattaaaggagaaaaaagattcacaaaataaaaaaaaaggaatcataaattgatattcattaaggaatatgttttttgtcaattgca 34108919  T
Q  99 aacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattga 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34108920 aacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaaattgaatgttaaaggctaagtaaattga 34109019  T
Q  199 gt-nnnnnnnttcattataggatatcatataaagttcacaggaaataaata 248  Q
    ||        |||||||||| ||||||||||||||||||||||||||||||    
T  34109020 gtaaaaaaaattcattatagaatatcatataaagttcacaggaaataaata 34109070  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 29608697 - 29608765
Alignment:
Q  85 ttttgtcaatcggaaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgta 156  Q
    |||||| ||| | ||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||    
T  29608697 ttttgtaaattgcaaacaaaactttactttatttttcattgttatgc---attataaacaatagttagtgta 29608765  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 3693504 - 3693565
Alignment:
Q  139 taaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattgagt 200  Q
    |||| |||||||| |||||||||||||| |||||||| |||| |||||||| ||||||||||    
T  3693504 taaataatagttagtgtaattaagcttaaaaacttgagtgttcaaggctaaataaattgagt 3693565  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 18257541 - 18257480
Alignment:
Q  139 taaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattgagt 200  Q
    |||| |||||||| ||||| ||| ||||||||||||| |||| |||||||| ||||||||||    
T  18257541 taaataatagttagtgtaaataaacttagaaacttgagtgttcaaggctaaataaattgagt 18257480  T

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Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 11500566 - 11500468
Alignment:
Q  99 aacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattga 198  Q
    ||||||||||||||||||||||||||||||||||||||   ||| ||||| || |||||||||||||||||||||||||||| |||||||||||||||||    
T  11500566 aacaaaactttactttatttttcattgttatgcattat---aaataatagctagtgtaattaagcttagaaacttgaatgtttaaggctaagtaaattga 11500470  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 36644760 - 36644875
Alignment:
Q  86 tttgtcaatcggaaacaaaactttactttatttttcattgttatgcatt-attataaacaatagttattgtaattaagcttagaaacttgaatgttaaag 184  Q
    ||||||||| | ||||||||||||| ||||||||||||||||||  ||  ||| ||||||||||||| ||||||||||||||||||||||| |||| |||    
T  36644760 tttgtcaattgcaaacaaaactttaatttatttttcattgttatatatgcattctaaacaatagttaatgtaattaagcttagaaacttgagtgttcaag 36644859  T
Q  185 gctaagtaaattgagt 200  Q
    ||| | ||||||||||    
T  36644860 gctgaataaattgagt 36644875  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 22516824 - 22516860
Alignment:
Q  98 aaacaaaactttactttatttttcattgttatgcatt 134  Q
    |||||||| |||||||||||||||||| |||||||||    
T  22516824 aaacaaaaatttactttatttttcatttttatgcatt 22516860  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 196
Target Start/End: Complemental strand, 3404097 - 3404002
Alignment:
Q  98 aaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaatt 196  Q
    |||||||| ||||||||||||||||||||||||||   ||||||| ||||||||  |||||||||||||||||||||||| || |||| |||| |||||    
T  3404097 aaacaaaattttactttatttttcattgttatgca---ttataaataatagttagcgtaattaagcttagaaacttgaattttcaaggttaagcaaatt 3404002  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 25032825 - 25032862
Alignment:
Q  98 aaacaaaactttactttatttttcattgttatgcatta 135  Q
    |||||||| |||||||||||||||||||||||||||||    
T  25032825 aaacaaaagtttactttatttttcattgttatgcatta 25032862  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 36690323 - 36690225
Alignment:
Q  98 aaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattg 197  Q
    ||||||||||||||||||||| ||||||||||||   |||| ||| |||||||| || ||||||||||||||||||||| | | ||||||||||||||||    
T  36690323 aaacaaaactttactttatttctcattgttatgc---attaaaaataatagttagtg-aattaagcttagaaacttgaaggctcaaggctaagtaaattg 36690228  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 28111578 - 28111467
Alignment:
Q  85 ttttgtcaatcggaaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaag 184  Q
    |||||| ||| | ||||||||||||||||||||||||||||||||||||     |||| || ||||| |||||| |||||||||||||||| |||| |||    
T  28111578 ttttgtaaattgcaaacaaaactttactttatttttcattgttatgcatc----taaataaaagttagtgtaatcaagcttagaaacttgagtgttcaag 28111483  T
Q  185 gctaagtaaattgagt 200  Q
     |||| ||||||||||    
T  28111482 tctaaataaattgagt 28111467  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 24574122 - 24574035
Alignment:
Q  110 actttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattgagt 200  Q
    ||||||||||| |||| |||||||| |   ||| |||||  |||||||||||| |||||||||||| |||| |||||||| ||||| ||||    
T  24574122 actttattttttattggtatgcattct---aaataataggcattgtaattaagattagaaacttgagtgttgaaggctaaataaatcgagt 24574035  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 2758260 - 2758218
Alignment:
Q  208 ttcattataggatatcatataaagttcacaggaaataaatagt 250  Q
    |||||||||  |||||||||||||||||||| |||||||||||    
T  2758260 ttcattatacaatatcatataaagttcacagaaaataaatagt 2758218  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 16948970 - 16948925
Alignment:
Q  85 ttttgtcaatcggaaacaaaactttactttatttttcattgttatg 130  Q
    |||||| ||| ||||||||||| |||||| ||||||||||||||||    
T  16948970 ttttgtaaattggaaacaaaacattacttaatttttcattgttatg 16948925  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 2758337 - 2758297
Alignment:
Q  85 ttttgtcaatcggaaacaaaactttactttatttttcattg 125  Q
    |||||| ||| | ||||||||||||||||||||||||||||    
T  2758337 ttttgtaaattgcaaacaaaactttactttatttttcattg 2758297  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 16904747 - 16904783
Alignment:
Q  96 ggaaacaaaactttactttatttttcattgttatgca 132  Q
    |||||||||||| |||||||||||||||| |||||||    
T  16904747 ggaaacaaaactctactttatttttcattattatgca 16904783  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 15545182 - 15545281
Alignment:
Q  98 aaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattg 197  Q
    ||||||||||||||||||||||||||| | ||||||| |   ||| |||||||  ||||||||||||||||||||||| |||  |||||||| ||| |||    
T  15545182 aaacaaaactttactttatttttcattttaatgcattct---aaataatagttggtgtaattaagcttagaaacttgagtgtacaaggctaaataatttg 15545278  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 10912220 - 10912149
Alignment:
Q  64 aaggaatcataaattgatatt-ttttgtcaatcggaaacaaaactttactttatttttcattgttatgcatt 134  Q
    ||||||||||||||| ||||| |||||| ||| | |||||||||||||||||||||||||||||||| ||||    
T  10912220 aaggaatcataaattaatattcttttgtaaattgcaaacaaaactttactttatttttcattgttatccatt 10912149  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 195
Target Start/End: Complemental strand, 21178399 - 21178305
Alignment:
Q  98 aaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaat 195  Q
    |||||||| ||||||||| ||||||||||||||||||     ||| |||||||  |||||||||| |||||||||||| |||| |||||||| |||||    
T  21178399 aaacaaaattttactttagttttcattgttatgcattcc---aaataatagttggtgtaattaaggttagaaacttgagtgttcaaggctaaataaat 21178305  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 25815306 - 25815207
Alignment:
Q  98 aaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattg 197  Q
    |||||||| |||||||||||||| ||||||||||| ||    ||| |||| ||| | |||||||| ||||||||||||||||| ||| | ||||||| ||    
T  25815306 aaacaaaattttactttattttttattgttatgcaataa---aaataataattagtataattaagtttagaaacttgaatgttcaagaccaagtaaaatg 25815210  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 11783033 - 11783089
Alignment:
Q  144 aatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattgagt 200  Q
    |||||||| |||||||||||||||||| |||| | ||||||| ||| ||||||||||    
T  11783033 aatagttagtgtaattaagcttagaaatttgagtcttaaaggttaaataaattgagt 11783089  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 36409633 - 36409577
Alignment:
Q  144 aatagttattgtaattaagcttagaaacttgaatgttaaaggctaagtaaattgagt 200  Q
    |||||||| | |||||||| |||||||| |||||||| || ||||||||||||||||    
T  36409633 aatagttagtttaattaagattagaaacatgaatgttcaatgctaagtaaattgagt 36409577  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 11857435 - 11857386
Alignment:
Q  83 ttttttgtcaatcggaaacaaaactttactttatttttcattgttatgca 132  Q
    |||||||| ||| | ||||||||| |||||||||||| ||||||||||||    
T  11857435 ttttttgtaaattgcaaacaaaacgttactttattttccattgttatgca 11857386  T

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