View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_76 (Length: 292)
Name: NF16569_low_76
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 51044924 - 51045187
Alignment:
| Q |
19 |
ataagccaacatttgatcttgatccattgcaattacaatttgaactgaaccaatttggaaccaattcaagctatttcttctcttcagacaacatcagcaa |
118 |
Q |
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| T |
51044924 |
ataagccaacatttgatcttgatccattgcaattacaatttgaactgaaccaatttggaaccaattcaagctatttcttctcttcagacaacatcagcaa |
51045023 |
T |
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| Q |
119 |
caactcattttccaacatgattaatgaaaatacagcaggtgggttaatctcatgggaaggtgaaaattacaataagctgttggatcctttgttgcagttt |
218 |
Q |
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| T |
51045024 |
caactcattttccaacatgattaatgaaaatacagcaggtgggttaatctcatgggaaggtgaaaattaaaataagctgttggatcctttgttgcagttt |
51045123 |
T |
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| Q |
219 |
gaagtgaataatgcagtaaaatacaacatcaacaagacaaattcaatggatttcagtacctatg |
282 |
Q |
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| T |
51045124 |
gaagtgaataatgcagtaaaatacaacatcaacaagacaaattcaatggatttcagtacctatg |
51045187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 34626105 - 34626051
Alignment:
| Q |
50 |
attacaatttgaactgaaccaatttggaaccaattcaagctatttcttctcttca |
104 |
Q |
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| T |
34626105 |
attacaatttgaacagaatcagtttggaaacaattcaagctatttcttctcttca |
34626051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 34625922 - 34625874
Alignment:
| Q |
131 |
caacatgattaatgaaaatacagcaggtgggttaatctcatgggaaggtgaa |
182 |
Q |
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| T |
34625922 |
caacatgattaatgaaaat---gcaggtggattaatctcatgggaaggtgaa |
34625874 |
T |
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