View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_78 (Length: 285)
Name: NF16569_low_78
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 130238 - 130509
Alignment:
| Q |
1 |
aagctccttatgctttgtggattatttccagaagactttgatattcctattgaaattttattgcgtcatgcaataggcttgggattgttcaaagccgttg |
100 |
Q |
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| T |
130238 |
aagctccttatgctttgtggattatttccagaagactttgatattcctattgaaattttattgcgtcatgcaataggcttgggattgttcaaagccgttg |
130337 |
T |
|
| Q |
101 |
gtgagccattgaaagcaagaaatcgagtgcgtagtttggtgggcgatctaaagagatgtttcttgttgttggacagcaatgttccagggtgtgtgaagat |
200 |
Q |
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| T |
130338 |
gtgagccattgaaagcaagaaatcgagtgcgtagtttggtgggcgatctaaagagatgtttcttgttgttggacagcaatgttccagggtgtgtgaagat |
130437 |
T |
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| Q |
201 |
gcacgacattgtacgtgatgttgtcatcttagtttcatttaaaactgaacacaagtttatggtgaaatatga |
272 |
Q |
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| T |
130438 |
gcacgacattgtacgtgatgttgtcatcttagtttcatttaaaactgaacacaagtttatggtgaaatatga |
130509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 34554554 - 34554287
Alignment:
| Q |
5 |
tccttatgctttgtggattatttccagaagactttgatattcctattgaaattttattgcgtcatgcaataggcttgggattgttcaaagccgttggtga |
104 |
Q |
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| T |
34554554 |
tccttatgctttgtggattgtttccggaagactttgacatacctattgaaagtttattatgtcacgcaatgggcttgggattgttcaaagctatcggtga |
34554455 |
T |
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| Q |
105 |
gccattgaaagcaagaaatcgagtgcgtagtttggtgggcgatctaaagagatgtttcttgttgttggacagcaatgttccagggtgtgtgaagatgcac |
204 |
Q |
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| T |
34554454 |
gccatggaaagcaagaaaccgagtgaatagttttgtggacgatctaaagagatgcttcttgttgttggatagcaatgtcccagggtgtgtgaagatacat |
34554355 |
T |
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| Q |
205 |
gacattgtacgtgatgttgtcatcttagtttcatttaaaactgaacacaagtttatggtgaaatatga |
272 |
Q |
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| T |
34554354 |
gatattgtacgtgatgttgtcatattagttgcatttaaaatagaacatgggtttatggtgagatatga |
34554287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 34291731 - 34291556
Alignment:
| Q |
7 |
cttatgctttgtggattatttccagaagactttgatattcctattgaaattttattgcgtcatgcaataggcttgggattgttcaaagccgttggtgagc |
106 |
Q |
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| T |
34291731 |
cttatgctttgtggattatttccagaagactttgacattcctattgaaagtttattgtatcatgcttttggcttgggattgttcaaatacattaatgcat |
34291632 |
T |
|
| Q |
107 |
cattgaaagcaagaaatcgagtgcgtagtttggtgggcgatctaaagagatgtttcttgttgttggacagcaatgt |
182 |
Q |
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| T |
34291631 |
cattgaaagcaagaaaccgagtgcatacattggtggaagatctaagacgaaagttcttgttgttggacagcaatgt |
34291556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 34566228 - 34566009
Alignment:
| Q |
5 |
tccttatgctttgtggattatttccagaagactttgatattcctattgaaattttattgcgtcatgcaataggcttgggattgttcaaagccgttggtga |
104 |
Q |
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||||||||||||||||||| | ||||||||||||||| ||||| ||||||| ||||||| |||||| | |||||||| |||||||| | | ||| |
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| T |
34566228 |
tccttatgctttgtggattgtatccagaagactttgacattcccattgaaagtttattgtgtcatggttttggcttgggtccgttcaaagacatcagtgc |
34566129 |
T |
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| Q |
105 |
gccattgaaagcaagaaatcgagtgcgtagtttggtgggcgatctaaagagatgtttcttgttgttggacagcaatgttccagggtgtgtgaagatgcac |
204 |
Q |
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| T |
34566128 |
atcatgggaagcaagaaatcgagtgcatacattggtggaagatctaaggagaaagtttttattgttggatagcagtgtgccagggtgtgtgaagatgcat |
34566029 |
T |
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| Q |
205 |
gacattgtacgtgatgttgt |
224 |
Q |
| |
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| T |
34566028 |
gatattgtgcgtaatgttgt |
34566009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 15895918 - 15895830
Alignment:
| Q |
5 |
tccttatgctttgtggattatttccagaagactttgatattcctattgaaattttattgcgtcatgcaataggcttgggattgttcaaa |
93 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| |||| ||||||| | || |||||| |||||||| |
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| T |
15895918 |
tccttatgctttgtggattgtttcctgaagactttgatattcctattgaatgtttgttgcatcatgcagtgggtttgggaatgttcaaa |
15895830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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