View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_8 (Length: 612)
Name: NF16569_low_8
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 16 - 599
Target Start/End: Complemental strand, 7551708 - 7551126
Alignment:
| Q |
16 |
caaaagctaccatcagccaagaagctatgtcttcaaacttgatgtgagatcgattacaaaatatggtcctgcaaggataaaccaaaatgtcgaaagtcta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7551708 |
caaaagctaccatcagccaagaagctatgtcttcaaacttgatgtgagatcgatcacaaaatatggttctgcaaggataaaccaaaatgtcgaaagtcta |
7551609 |
T |
|
| Q |
116 |
taaaagttagtatacaatgttatgttcccaaaggagaaaatgtagcaattttaaaaacataactcataggaaggtgctattgtaggaaaacaggnnnnnn |
215 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7551608 |
taaaagttagtatacaatgttatgttcccaaagcagaaaatgtagcaattttacaaacataactcataggaaggtgctattgtaggaaaacaggaaaaaa |
7551509 |
T |
|
| Q |
216 |
nntaaagatttccacaagagcataagtaatctagaagaacaaggaacaaaagtatagttgtaaggctggcacatttatctgaaagcatgtcaaaaagtat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7551508 |
a-taaagatttccacaagagcataagtaatctagaagaacaaggaaaaaaagtatagttgtaaggctggcacatttatctgaaagcatgtcaaaaagtat |
7551410 |
T |
|
| Q |
316 |
agttgtatacatcgcaatttagtaaaccattcttatatcattgctgaactgataggcaagtcaatatcagaatgttttggatgtcaatgcctaccttgta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7551409 |
agttgtatacatcgcaatttagtaaaccattcttatatcattgctggactgagaggcaagtcaatatcagaatgttttggatgtcaatgcctaccttgta |
7551310 |
T |
|
| Q |
416 |
aatttggaattatagcatttcaaataatgccaacttatgctataaactatctctgcacgctcaatagcaaatacatctcctggtatctcctttgcaacca |
515 |
Q |
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| T |
7551309 |
aatttggaattatagcatttcaaataatgccaacttatgctataaactatctctgcacgctcaatagcaaatacatctcctggtatctcctttgcaacca |
7551210 |
T |
|
| Q |
516 |
tttggtgaaaataatctagaggaattgatgaaaacgtgtggcagaatgagtttcttccaaacagaagtgatatgctacttagaa |
599 |
Q |
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| T |
7551209 |
tttggtgaaaataatctagaggaattgatgaaaacgtgtggcagaatgagtttcttccaaacagaagtgatatgctacttagaa |
7551126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 4e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 297 - 599
Target Start/End: Complemental strand, 1134519 - 1134217
Alignment:
| Q |
297 |
aaagcatgtcaaaaagtatagttgtatacatcgcaatttagtaaaccattcttatatcattgctgaactgataggcaagtcaatatcagaatgttttgga |
396 |
Q |
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|||||| |||||||||||| ||||||||||| |||| ||||||||||||| ||||| ||||||||||||| |||| | ||||| |||| | |||||||| |
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| T |
1134519 |
aaagcaagtcaaaaagtattgttgtatacattgcaagttagtaaaccatttgtatattattgctgaactgagaggccaatcaatgtcagtacgttttgga |
1134420 |
T |
|
| Q |
397 |
tgtcaatgcctaccttgtaaatttggaattatagcatttcaaataatgccaacttatgctataaactatctctgcacgctcaatagcaaatacatctcct |
496 |
Q |
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||||||||||||||| || | | |||| ||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1134419 |
tgtcaatgcctacctcatatactctgaatgatagcatttcaaagaatgccaacatatgctataaactatctcagcacgctcaatagcaaatacatctccc |
1134320 |
T |
|
| Q |
497 |
ggtatctcctttgcaaccatttggtgaaaataatctagaggaattgatgaaaacgtgtggcagaatgagtttcttccaaacagaagtgatatgctactta |
596 |
Q |
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||||||||||||||||||| |||||||||| |||||| ||||||||||||||| ||||||||||||| |||||| |||||||||| || ||||| |||| |
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| T |
1134319 |
ggtatctcctttgcaaccaattggtgaaaagaatctacaggaattgatgaaaaagtgtggcagaatgggtttctgccaaacagaaacgacatgcttctta |
1134220 |
T |
|
| Q |
597 |
gaa |
599 |
Q |
| |
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||| |
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| T |
1134219 |
gaa |
1134217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 1134972 - 1134778
Alignment:
| Q |
16 |
caaaagctaccatcagccaagaagctatgtcttcaaacttgatgtgagatcgattacaaaatatggtcctgcaaggataaaccaaaatgtcgaaagtcta |
115 |
Q |
| |
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||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| ||| ||||| ||||| ||||||||||||| |||||||| |
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| T |
1134972 |
caaaagctaccatcagccaagaagcaacgtcttcaaacttgatgtgagatagattacaaaaaatgttcctgtaaggaaaaaccaaaatgtccaaagtcta |
1134873 |
T |
|
| Q |
116 |
taaaagtt-agtatacaatgttatgttcccaaaggagaaaatgtagcaattttaaaaacataactcataggaaggtgctattgtaggaaaacagg |
209 |
Q |
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|||||||| | |||| |||||||||||| || || |||| || |||||||| |||||||||||||||| || | ||| |||||||| ||||| |
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| T |
1134872 |
taaaagttaattatagaatgttatgttcacagagcgtcaaatataacaattttacaaacataactcatagggagatactactgtaggaatacagg |
1134778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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