View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_83 (Length: 265)
Name: NF16569_low_83
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_83 |
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| [»] scaffold1194 (1 HSPs) |
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Alignment Details
Target: scaffold1194 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold1194
Description:
Target: scaffold1194; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 648 - 422
Alignment:
| Q |
14 |
ataattctggtatggtgtaatgtgataaacttattaatgcacaataatacaatccttaataatgcaatattttcaggtaagggatttcaacgttgcaaaa |
113 |
Q |
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| T |
648 |
ataattctggtatggtgtaatgtgataaacttattaatgcacaataatacaatccttaataatgcaatattttcaggtaagggatttcaacgttgcaaaa |
549 |
T |
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| Q |
114 |
gaagaagctgatataagttattatgctggttatgttggtaagattttcttcnnnnnnnnnnnnagtattttctagaagaatattatcgttgatttatgtt |
213 |
Q |
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| T |
548 |
gaagaagctgatataagttattacgctggttatgttggtaagaatttctt-------ttttttagtatttccaagaagaatattatcattgatatatgtt |
456 |
T |
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| Q |
214 |
tttcattgaagatgattgaaaatgttgtaggatct |
248 |
Q |
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| T |
455 |
cttcattgaag-tgactgaaaatgctgtaggatct |
422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 16529826 - 16529597
Alignment:
| Q |
14 |
ataattctggtatggtgtaatgtgataaacttattaatgcacaataatacaatccttaataatgcaa----tattttcaggtaagggatttcaacgttgc |
109 |
Q |
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| T |
16529826 |
ataatactggtatgatctactgtgataaaatgattaatgcaca-taatatactcctcaataatgaaactcttatgttcaggtaagggatttcaacgttgc |
16529728 |
T |
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| Q |
110 |
aaaagaagaagctgatataagttattatgctggttatgttggtaagattttcttcnnnnnnnnnnnnagtattttctagaagaatattatcgttgattta |
209 |
Q |
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| T |
16529727 |
aaaagaagaagctgatataagttattatgctggttatgttggtaagattttctt-------ttttttagtatttccaagaagaatattatcattgatata |
16529635 |
T |
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| Q |
210 |
tgtttttcattgaagatgattgaaaatgttgtaggatct |
248 |
Q |
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| T |
16529634 |
tgttcttcattgaag-tgactgaaaatgctgtaggatct |
16529597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 16589792 - 16589685
Alignment:
| Q |
55 |
caataatacaatccttaataatgcaa----tattttcaggtaagggatttcaacgttgcaaaagaagaagctgatataagttattatgctggttatgttg |
150 |
Q |
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| T |
16589792 |
caataatacaatgctcaataatgcaacatttatttttaggtaagggacttcaatgttgcaaaagaagaagctgatattagttactatgctggttatattg |
16589693 |
T |
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| Q |
151 |
gtaagatt |
158 |
Q |
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|||||||| |
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| T |
16589692 |
gtaagatt |
16589685 |
T |
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