View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16569_low_84 (Length: 264)
Name: NF16569_low_84
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_84 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 28438288 - 28438056
Alignment:
| Q |
11 |
gaagaaggtaactctcaagttcagaatgtgaaaaatgtggctagagaaacatcgccttttaagcctcatgatactcctccatccacagttaatgaatgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28438288 |
gaagaaggtaactctcaagttcagaatgtgaaaaatgtggctagagaaacatcgccttttaagcctcatgatactcctccatccacagttaatgaatgtg |
28438189 |
T |
|
| Q |
111 |
acacttcaactaaagggaagaatatggagccagattatgaagtgctgcagaagaattttgcacaagaagagcctaaacctggtagtgctactagtgtggc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28438188 |
acacttcaactaaagggaagaatatggagccagattatgaagtgctgcagaagaattttgcacaagaagagcctaaacctggtagtgctactagtgtggc |
28438089 |
T |
|
| Q |
211 |
atatggagtgcaggaacgagatcagaaatatat |
243 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
28438088 |
atatggagtgcaggaaagagatcagaaatatat |
28438056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 32 - 243
Target Start/End: Original strand, 35616722 - 35616933
Alignment:
| Q |
32 |
cagaatgtgaaaaatgtggctagagaaacatcgccttttaagcctcatgatactcctccatccacagttaatgaatgtgacacttcaactaaagggaaga |
131 |
Q |
| |
|
|||||||||||||||||| | | ||| |||| ||||||||||| || ||| |||| |||||||||||||||||||| ||||||||||| |||| ||| |
|
|
| T |
35616722 |
cagaatgtgaaaaatgtgtcaatggaatcatcaccttttaagccgcacgatgctccaccatccacagttaatgaatgcgacacttcaaccaaagacaagc |
35616821 |
T |
|
| Q |
132 |
atatggagccagattatgaagtgctgcagaagaattttgcacaagaagagcctaaacctggtagtgctactagtgtggcatatggagtgcaggaacgaga |
231 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |
|
|
| T |
35616822 |
atatggttacagactatgaagtgctgcagaagagttctacacaagaagagcctaaacctggtagtactactagtgtggcatatggagtgcaagaaagaga |
35616921 |
T |
|
| Q |
232 |
tcagaaatatat |
243 |
Q |
| |
|
|||||||||||| |
|
|
| T |
35616922 |
tcagaaatatat |
35616933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 35617927 - 35617965
Alignment:
| Q |
205 |
tgtggcatatggagtgcaggaacgagatcagaaatatat |
243 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
35617927 |
tgtgccatatggagtgcaggaaagagatcagaaatatat |
35617965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University