View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_85 (Length: 264)
Name: NF16569_low_85
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_85 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 10254756 - 10255020
Alignment:
| Q |
1 |
atccaagacatgttttgtcccaaa-ctttgcaccagtccttgacgaactccctccaacacaatgtcaaatcatcaaaggtacactcccgccgtcacttaa |
99 |
Q |
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| T |
10254756 |
atccaagacatgttttgtcccaaaactttgcaccagtccttgacgaactccctccaacacaatgcaaagtcattaaaggcacacttccaccgtcacttaa |
10254855 |
T |
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| Q |
100 |
cggtgcttacataagaaacggaccaaacccacagttccttccacgtggaccctaccacctcttcgacggtgacggcatgcttcacgccattacaatctca |
199 |
Q |
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| T |
10254856 |
cggtgtttacataagaaacggaccaaacccacagttccttccacgtggaccctaccacctcttcgacggtgatggcatgcttcacgccattacaatctca |
10254955 |
T |
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| Q |
200 |
aacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaaaatcgaaaacgaagc |
264 |
Q |
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| T |
10254956 |
aacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaaaatcgaaaacgaagc |
10255020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 10231069 - 10230805
Alignment:
| Q |
1 |
atccaagacatgttttgtcccaaa-ctttgcaccagtccttgacgaactccctccaacacaatgtcaaatcatcaaaggtacactcccgccgtcacttaa |
99 |
Q |
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| T |
10231069 |
atccaagacatgttttgtcccaaaactttgcaccagtcctagacgaactccctccaacacaatgtgtaatcatcaaaggtacactcccgccgtcacttta |
10230970 |
T |
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| Q |
100 |
cggtgcttacataagaaacggaccaaacccacagttccttccacgtggaccctaccacctcttcgacggtgacggcatgcttcacgccattacaatctca |
199 |
Q |
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| T |
10230969 |
cggtgcttacataagaaacggaccaaacccacagttccttccacgtggaccctaccatctctttgacggtgacggcatgcttcatgccattacaatctca |
10230870 |
T |
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| Q |
200 |
aacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaaaatcgaaaacgaagc |
264 |
Q |
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| T |
10230869 |
aacgggaaagccacactatgtagccgttatgtaaaaacctacaagtacaaaattgaaaacaaagc |
10230805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 10239849 - 10239585
Alignment:
| Q |
1 |
atccaagacatgttttgtcccaaa-ctttgcaccagtccttgacgaactccctccaacacaatgtcaaatcatcaaaggtacactcccgccgtcacttaa |
99 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||| ||||| ||||| || ||||||||||| |
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| T |
10239849 |
atccaagacatgttttgtcccaaaactttgcaccagtccttgacgaactccctccaacacaatgcaaagtcattaaaggcacacttccaccgtcacttaa |
10239750 |
T |
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| Q |
100 |
cggtgcttacataagaaacggaccaaacccacagttccttccacgtggaccctaccacctcttcgacggtgacggcatgcttcacgccattacaatctca |
199 |
Q |
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| T |
10239749 |
cggtgtttacataagaaacggaccaaaccctcagttccttccacgtggaccttaccatctctttgacggtgacggcatgcttcatgctgttaaaatcaca |
10239650 |
T |
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| Q |
200 |
aacggaaaagctacactctgtagccgttacgttcaaacttacaaatacaaaatcgaaaacgaagc |
264 |
Q |
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||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
10239649 |
aacggaaaagccacactatgtagccgttacgttcaaacctataaatacaaaatcgaaaacgaagc |
10239585 |
T |
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