View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16569_low_86 (Length: 263)
Name: NF16569_low_86
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_86 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 46772151 - 46771997
Alignment:
| Q |
1 |
cactatcccgaaactcatacaaaaaagaagactctgaaaacacacaactcagagctaaaaggaggaaggagaagcaaaataaacaacagtctaattcgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46772151 |
cactatcccgaaactcatacaaaaaagaagactctgaaaacacacagctcagagctaaaaggaggaaggagaagcaaaataaacaacagtctgattcgcc |
46772052 |
T |
|
| Q |
101 |
accattaccatctcaacgagtgcgttccagaatcaatttcaaggtctctcctccg |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46772051 |
accattaccatctcaacgagtgcgttccagaatcaatttcaaggtctctcctccg |
46771997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 46771958 - 46771895
Alignment:
| Q |
194 |
caagtatttagcaaatagggtatctcctaggaataggccatgggctagaaagacagtattattt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46771958 |
caagtatttagcaaatagggtatctcctaggaataggccatgggctagaaagacagtactattt |
46771895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University