View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16569_low_90 (Length: 260)
Name: NF16569_low_90
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_90 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 242
Target Start/End: Complemental strand, 8746753 - 8746513
Alignment:
| Q |
2 |
gcagctatggaatgggtgaaagaattggagttcaagaaagttatgttttgtttagattcaaaaggagtagtacactcattcaactcacagattcaaaatg |
101 |
Q |
| |
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||||||||| ||||||| | |||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||| | ||| |
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| T |
8746753 |
gcagctatgaaatgggtaagagaattggagttcaagaaagttatcttctgtttagattcaaaaggagtagtagactcattcaactcacaggttcgagatg |
8746654 |
T |
|
| Q |
102 |
acacagagcttggttccatcttaactaggtgtagagtaaatttatctaatattcgtaacaactcttatgtcgagttttctaggagagaggctaatgtggt |
201 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
8746653 |
acacagagcttggttccatcttagctaggtgtagagtaaatttatctaatatttgtaacaactcttatgtcgagttttctaggagagaggctaatatggt |
8746554 |
T |
|
| Q |
202 |
tgctcataaacttgcaaagacggccgtatataatgctagtt |
242 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
8746553 |
tgctcatgaacttgcaaagacggccgtatataatgctagtt |
8746513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 2442164 - 2442229
Alignment:
| Q |
156 |
gtaacaactcttatgtcgagttttctaggagagaggctaatgtggttgctcataaacttgcaaaga |
221 |
Q |
| |
|
||||||||||||||||| | |||||||||||| || ||||| ||||||||||||| ||||| |||| |
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|
| T |
2442164 |
gtaacaactcttatgtcaaattttctaggagatagactaatatggttgctcataatcttgctaaga |
2442229 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 225320 - 225237
Alignment:
| Q |
154 |
tcgtaacaactcttatgtcgagttttctaggagagaggctaatgtggttgctcataaacttgcaaagacggccgtatataatgc |
237 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||| |||| ||||| | ||||| || | |||| ||||| |||| ||||| |
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|
| T |
225320 |
tcgtaacaactcttatgtcgcgttttttatgagagaggttaatatggtttcccataatctagtaaaggcggccatatacaatgc |
225237 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 6470679 - 6470916
Alignment:
| Q |
2 |
gcagctatggaatgggtgaaagaattggagttcaagaaagttatgttttgtttagattcaaaaggagtagtacactcattcaactcacagattcaaaatg |
101 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||| |||||||| ||| | ||| |
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|
| T |
6470679 |
gcagctatggaatgggtaagagaattggagttcaagaaagttatcttctgtttagattcaaaaggagtagtagactcattgaactcacaagttcgagatg |
6470778 |
T |
|
| Q |
102 |
acacagagcttggttccatcttaactaggtgtagagtaaatttatctaatattcgtaacaactcttatgtcgagttttctag--gagagaggctaatgtg |
199 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| ||||| || |
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|
| T |
6470779 |
acacagagcttggttccatcttagctaggtgtagagtaaatttatctgatatttgtaacaactcttatgtcgagttttctaggagagagagactaatatg |
6470878 |
T |
|
| Q |
200 |
gttgctcataaacttgcaaagacggccgtatataatgc |
237 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
6470879 |
gttgctcatgaacttgcaaaggcggccgtatataatgc |
6470916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 6750551 - 6750314
Alignment:
| Q |
2 |
gcagctatggaatgggtgaaagaattggagttcaagaaagttatgttttgtttagattcaaaaggagtagtacactcattcaactcacagattcaaaatg |
101 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||| || | |||||||||||||||||||||| ||||| | |||||||| ||| | ||| |
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|
| T |
6750551 |
gcagctatggaatgggtaagagaattggagttcaagaaagttatcttctttttagattcaaaaggagtagtagactcactgaactcacaagttcgagatg |
6750452 |
T |
|
| Q |
102 |
acacagagcttggttccatcttaactaggtgtagagtaaatttatctaatattcgtaacaactcttatgtcgagttttctaggag--agaggctaatgtg |
199 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||| |||| || |
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|
| T |
6750451 |
acacggagcttggttccatcttagctaggtgtagagtaaatttatctgatatttgtaacaactcttatgtcgagttttctaggagagagagattaatatg |
6750352 |
T |
|
| Q |
200 |
gttgctcataaacttgcaaagacggccgtatataatgc |
237 |
Q |
| |
|
||||||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
6750351 |
gttgctcatgaacttgcaaaggcggctgtatataatgc |
6750314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 28694994 - 28695228
Alignment:
| Q |
2 |
gcagctatggaatgggtgaaagaattggagttcaagaaagttatgttttgtttagattcaaaaggagtagtacactcattcaactcacagattcaaaatg |
101 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||| || ||||||||||| |||||||||||| ||||| | |||||| || ||| | ||| |
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|
| T |
28694994 |
gcagctatggaatgggtaatagaattggagttcaagaaagttatcttctgtttagattctaaaggagtagtagactcactgaactcagaggttcgagatg |
28695093 |
T |
|
| Q |
102 |
acacagagcttggttccatcttaactaggtgtagagtaaatttatctaatattcgtaacaactcttatgtcgagttttctaggagagaggctaatgtggt |
201 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| || ||||| |||| |
|
|
| T |
28695094 |
acacagagcttggttccatcttagctaggtgtagagtaaatttatctggaatttgtaacaactcttatttcgagttttctaggagacagtctaatatggt |
28695193 |
T |
|
| Q |
202 |
tgctcataaacttgcaaagacggccgtatataatg |
236 |
Q |
| |
|
||||||| ||||||||||| || || ||||||||| |
|
|
| T |
28695194 |
tgctcatgaacttgcaaaggcgaccatatataatg |
28695228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 41290036 - 41289800
Alignment:
| Q |
2 |
gcagctatggaatgggtgaaagaattggagttcaagaaagttatgttttgtttagattcaaaaggagta--gtacactcattcaactcacagattcaaaa |
99 |
Q |
| |
|
||||||||| ||||||| | |||| | ||||| ||||| |||| |||| ||||||||||||| |||| ||| |||| |||||| |||| ||| | | |
|
|
| T |
41290036 |
gcagctatgaaatgggtaagagaactagagtttaagaagattattgtttgcttagattcaaaagtagtatagtagactcgttcaacacacatgttcgaga |
41289937 |
T |
|
| Q |
100 |
tgacacagagcttggttccatcttaactaggtgtagagtaaatttatctaatattcgtaacaactcttatgtcgagttttctaggagagaggctaatgtg |
199 |
Q |
| |
|
|||| | ||||||||||||||| || ||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| ||||| |||||| || |
|
|
| T |
41289936 |
tgacgcggagcttggttccatcctagctaggtgtagagttaatttatctgatattcgtaacaactcttatgtcgatttttctaaaagagatgctaatatg |
41289837 |
T |
|
| Q |
200 |
gttgctcataaacttgcaaagacggccgtatataatg |
236 |
Q |
| |
|
|||||||||| |||||||| || || ||||||||| |
|
|
| T |
41289836 |
attgctcataatcttgcaaaagcgaccatatataatg |
41289800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 204
Target Start/End: Original strand, 9350773 - 9350851
Alignment:
| Q |
126 |
ctaggtgtagagtaaatttatctaatattcgtaacaactcttatgtcgagttttctaggagagaggctaatgtggttgc |
204 |
Q |
| |
|
|||| |||||||| | ||||||| ||||| ||||||||||| |||||||| | |||| ||| |||||||| ||||||| |
|
|
| T |
9350773 |
ctagatgtagagttagtttatctgatatttgtaacaactctaatgtcgagctctctaagagggaggctaacatggttgc |
9350851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 9375618 - 9375694
Alignment:
| Q |
126 |
ctaggtgtagagtaaatttatctaatattcgtaacaactcttatgtcgagttttctaggagagaggctaatgtggtt |
202 |
Q |
| |
|
|||| |||||||| | ||||||| ||||| ||||||||||| |||| ||| | |||| ||| ||||||||| ||||| |
|
|
| T |
9375618 |
ctagatgtagagttagtttatctgatatttgtaacaactctaatgtagagctctctaagagggaggctaatatggtt |
9375694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 6955284 - 6955054
Alignment:
| Q |
5 |
gctatggaatgggtgaaagaattggagttcaagaaagttatgttttgtttagattcaaaaggagtagtacactcattcaactcacagattcaaaatgaca |
104 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| ||| | |||||| |
|
|
| T |
6955284 |
gctatggaatgggtaagagaattggagttcaagaaagttatcttctgtttagattcaaaaggagtagtagactcattcaactcacatgttcgagatgaca |
6955185 |
T |
|
| Q |
105 |
cagagcttggttccatcttaactaggtgtagagtaaatttatctaatattcgtaacaactcttatgtcgagttttctaggagagaggctaatgtggttgc |
204 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
6955184 |
cagagcttggttccatctta--gaggtgtagagtaaatttatctaatatttgtaacaactcttatgtcgagttttctaagagagagactaatatggttgc |
6955087 |
T |
|
| Q |
205 |
tcataaacttgcaaagacggccgtatataatgc |
237 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||||| |
|
|
| T |
6955086 |
tcatgaacttgcaaaggtggctgtatataatgc |
6955054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 34118793 - 34118705
Alignment:
| Q |
2 |
gcagctatggaatgggtgaaagaattggagttcaagaaagttatgttttgtttagattcaaaaggagtagtacactcattcaactcaca |
90 |
Q |
| |
|
|||||| ||||||||| | |||||||||||| |||||| |||| || |||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
34118793 |
gcagctctggaatgggcaagagaattggagtttaagaaaattatcttctgtttaaattcaaaaggagtagtagcctcatgtaactcaca |
34118705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 32011393 - 32011599
Alignment:
| Q |
30 |
agttcaagaaagttatgttttgtttagattcaaaaggagtagtacactcattcaactcacagattcaaaatgacacagagcttggttccatcttaactag |
129 |
Q |
| |
|
|||| ||||||||||| || || ||||||||||||| | |||| ||||||||||| ||| ||| | |||||||| || |||||||||||||| ||| |
|
|
| T |
32011393 |
agtttaagaaagttattttctgcttagattcaaaagtaacagtagactcattcaacacacgtgttcgagatgacacatagattggttccatcttagttag |
32011492 |
T |
|
| Q |
130 |
gtgtagagtaaatttatctaatattcgtaacaactcttatgtcgagttttctaggagagaggctaatgtggttgctcataaacttgcaaagacggccgta |
229 |
Q |
| |
|
|||| |||| | |||| || ||||| |||||||||||||||||||||||||| ||||||| |||| |||||| |||||| ||| ||||||||||| || |
|
|
| T |
32011493 |
gtgtggagttactttacctgatatttttaacaactcttatgtcgagttttctatgagagagaataatatggttgttcataatcttccaaagacggccata |
32011592 |
T |
|
| Q |
230 |
tataatg |
236 |
Q |
| |
|
|||||| |
|
|
| T |
32011593 |
gataatg |
32011599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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