View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_93 (Length: 255)
Name: NF16569_low_93
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_93 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 47268195 - 47267956
Alignment:
| Q |
16 |
cacagacgacaaacaaaaagataaacatgacaaaactaggaaccacttgctttaggttaattttgtttaccaagcatctcatctaactctttagcaaacc |
115 |
Q |
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| T |
47268195 |
cacaaacgacaaacaaaaagataaacatgacaaaactaggaaccacttgctttaggttaattttgtttaccaagcatctcatctaactctttagcaaacc |
47268096 |
T |
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| Q |
116 |
tcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctccttctacattcatatgtgggatgatataggctgctccaggaaaaggccc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47268095 |
tcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctccttctacattcttatgtgggatgatataggctgctccaggaaaaggccc |
47267996 |
T |
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| Q |
216 |
agccccactttttgcagctccaccatacacggcctcaccc |
255 |
Q |
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| T |
47267995 |
agccccactttttgcagctccaccatacacggcctcaccc |
47267956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 255
Target Start/End: Complemental strand, 47284133 - 47283921
Alignment:
| Q |
42 |
atgacaaaactaggaaccacttgctttaggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaa |
141 |
Q |
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| T |
47284133 |
atgacaaaactagga-ccaatcgttgtaggttgattttgattaccaaacatcttatctaactcttcagcaaacctcttcataacttcagaggttaagaaa |
47284035 |
T |
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| Q |
142 |
actagtaatatgaaaccttcttctccttctacattcatatgtgggatgatataggctgctccaggaaaaggcccagccccactttttgcagctccaccat |
241 |
Q |
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| T |
47284034 |
attagtaatattaaaccttcttctccttctgcattcttatgtgggattatatacgttgctccaggtaaaggtccagccccaccttttaccactccaccat |
47283935 |
T |
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| Q |
242 |
acacggcctcaccc |
255 |
Q |
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| T |
47283934 |
acaccgcctcaccc |
47283921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 75 - 245
Target Start/End: Original strand, 47298719 - 47298889
Alignment:
| Q |
75 |
attttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctccttctaca |
174 |
Q |
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|||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||| ||| |||||||| | |||| || ||| ||||||||||| || | |
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| T |
47298719 |
attttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccttttata |
47298818 |
T |
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| Q |
175 |
ttcatatgtgggatgatataggctgctccaggaaaaggcccagccccactttttgcagctccaccatacac |
245 |
Q |
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| T |
47298819 |
ttcttatatgggacgatataggttgctccaggaaaaggtccagccccaccttttgcaactccaccatacac |
47298889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 42 - 255
Target Start/End: Complemental strand, 47279540 - 47279328
Alignment:
| Q |
42 |
atgacaaaactaggaaccacttgctttaggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaa |
141 |
Q |
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|||||||||||||| ||| ||| | |||||| |||||| ||||||| ||||| ||||||||||| |||||||||||||||| ||||| ||| || || |
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| T |
47279540 |
atgacaaaactaggc-ccaattgttgtaggttgattttggttaccaaacatcttatctaactcttcagcaaacctcttcataacttcagaggttaagaaa |
47279442 |
T |
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| Q |
142 |
actagtaatatgaaaccttcttctccttctacattcatatgtgggatgatataggctgctccaggaaaaggcccagccccactttttgcagctccaccat |
241 |
Q |
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| ||||||||| |||||||||||||||||| ||||| |||||||||||||| | | ||||| ||| |||||||| ||| ||| ||| | | ||||||| |
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| T |
47279441 |
attagtaatatcaaaccttcttctccttctgcattcttatgtgggatgataaacgttgctctaggtaaaggcccggccacacaatttaccaccccaccat |
47279342 |
T |
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| Q |
242 |
acacggcctcaccc |
255 |
Q |
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| T |
47279341 |
acaccgcctcaccc |
47279328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 245
Target Start/End: Original strand, 47292105 - 47292282
Alignment:
| Q |
68 |
taggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctcc |
167 |
Q |
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|||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||| ||| |||||||| | |||| || ||| ||||||||| |
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| T |
47292105 |
taggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctcc |
47292204 |
T |
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| Q |
168 |
ttctacattcatatgtgggatgatataggctgctccaggaaaaggcccagccccactttttgcagctccaccatacac |
245 |
Q |
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| T |
47292205 |
atttatattcttatatgggacgatataggttgatccaggaaatgttccagccccaccttttgcaactccaccatacac |
47292282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 68 - 196
Target Start/End: Complemental strand, 47243239 - 47243111
Alignment:
| Q |
68 |
taggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctcc |
167 |
Q |
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|||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| || ||| |||| | ||||||| || ||||||||||| |
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| T |
47243239 |
taggataattttggttaccaagcatatcatctaactctttagcaaacctcttcatatcttcagggggcaagcaaattggtaatattaacccttcttctcc |
47243140 |
T |
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| Q |
168 |
ttctacattcatatgtgggatgatatagg |
196 |
Q |
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| T |
47243139 |
ttttgcattcttatgcgggacaatatagg |
47243111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 47257366 - 47257252
Alignment:
| Q |
68 |
taggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctcc |
167 |
Q |
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|||| |||||||| ||||||||||| ||||||||||| ||| |||||||||||||| ||||| | ||| |||| | ||||||| || ||||||||||| |
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| T |
47257366 |
taggataattttggttaccaagcatatcatctaactccttaacaaacctcttcatatcttcaggaggcaagcaaattggtaatattaacccttcttctcc |
47257267 |
T |
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| Q |
168 |
ttctacattcatatg |
182 |
Q |
| |
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|| | ||||| |||| |
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| T |
47257266 |
ttttgcattcttatg |
47257252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 243
Target Start/End: Complemental strand, 20519901 - 20519740
Alignment:
| Q |
82 |
ttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctccttctacattcatat |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| | | |||| ||| | ||||||| ||||||| |||| || | |||| ||| |
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| T |
20519901 |
ttaccaagcatctcatctaactctttagcaaacctcttcatatcttcataaggcaaagaaattggtaatattaaacctttttcttgttttgaattcttat |
20519802 |
T |
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| Q |
182 |
gtgggatgatataggctgctccaggaaaaggcccagccccactttttgcagctccaccatac |
243 |
Q |
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|||||| || || ||||||| ||||| |||||||||| ||||||| ||||||||||| |
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| T |
20519801 |
gtgggacaatgatggttgctccacgaaaacccccagccccagcttttgcaactccaccatac |
20519740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 32731900 - 32731778
Alignment:
| Q |
74 |
aattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctccttctac |
173 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| || ||| |||| | | ||||| || ||||||||||||| | | |
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| T |
32731900 |
aattttggttaccaagcatatcatctaactctttagcaaacctcttcatatcttcagggggcaagcaaattggaaatattaacccttcttctccttttgc |
32731801 |
T |
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| Q |
174 |
attcatatgtgggatgatatagg |
196 |
Q |
| |
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|||| |||| |||| ||||||| |
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| T |
32731800 |
attcttatgcgggacaatatagg |
32731778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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