View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16569_low_96 (Length: 251)

Name: NF16569_low_96
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16569_low_96
NF16569_low_96
[»] chr6 (2 HSPs)
chr6 (1-241)||(5919887-5920127)
chr6 (71-217)||(14613262-14613408)
[»] chr5 (1 HSPs)
chr5 (1-246)||(20324194-20324439)
[»] chr1 (2 HSPs)
chr1 (121-246)||(32612606-32612731)
chr1 (6-157)||(52777580-52777731)
[»] chr3 (3 HSPs)
chr3 (6-157)||(19586940-19587091)
chr3 (6-157)||(12285200-12285351)
chr3 (116-144)||(4646295-4646323)
[»] scaffold0329 (1 HSPs)
scaffold0329 (6-157)||(10909-11060)
[»] chr4 (3 HSPs)
chr4 (6-157)||(22177171-22177322)
chr4 (63-195)||(18834149-18834281)
chr4 (110-217)||(35087208-35087315)
[»] chr2 (2 HSPs)
chr2 (8-169)||(34891091-34891252)
chr2 (2-90)||(29499342-29499430)
[»] scaffold0257 (1 HSPs)
scaffold0257 (115-217)||(13751-13853)
[»] chr7 (2 HSPs)
chr7 (115-217)||(19653410-19653512)
chr7 (121-174)||(3820156-3820209)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 5920127 - 5919887
Alignment:
Q  1 cttttctaaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  5920127 cttttctaaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgcttcattttgacatatggggtcctatttcaact 5920028  T
Q  101 tcatatgtccatggccatagatattttctcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5920027 tcatatgtccatggccatagatattttctcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttccgttc 5919928  T
Q  201 atgtgaaaaatttcattctcatgatcagaactcaatttcat 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5919927 atgtgaaaaatttcattctcatgatcagaactcaatttcat 5919887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 217
Target Start/End: Original strand, 14613262 - 14613408
Alignment:
Q  71 cattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgatgaccatagcagatttttatggattattc 170  Q
    |||||||| || ||||||||||| || | | | ||||| |||   ||||||||||||||||| || ||||||||  | || |||||| | |||||| |||    
T  14613262 cattttgatatttggggtcctctatccactgcttatgtacataatcatagatattttctcaccattcttgatgattacagtagatttgtttggattgttc 14613361  T
Q  171 ttctaaagtctaaatcagaagtttcccttcatgtgaaaaatttcatt 217  Q
    || |||| || ||||| |||||||| |  ||||| ||||| ||||||    
T  14613362 ttttaaaatcaaaatctgaagtttctcaacatgttaaaaacttcatt 14613408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 20324439 - 20324194
Alignment:
Q  1 cttttctaaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatt 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| |||| |||    
T  20324439 cttttctaaacaaaaacatttacctttttcttcaagtttatctcatgcttctactaattttgaattacttcattttgacatatggggtcctatttccatt 20324340  T
Q  101 tcatatgtccatggccatagatattttctcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttc 200  Q
    |||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  20324339 tcatctgtccatggtcatagatattttctcactatacttgatgatcatagcagatttttatggattattcttctaaaatctaaatcagaagtttctcttc 20324240  T
Q  201 atgtgaaaaatttcattctcatgatcagaactcaatttcatctcac 246  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||    
T  20324239 atgtgaaaaacttcattctcatgatcagaactcaatttcatgtcac 20324194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 246
Target Start/End: Complemental strand, 32612731 - 32612606
Alignment:
Q  121 atattttctcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttcatgtgaaaaatttcattctc 220  Q
    |||||||||||| ||| | ||||| |||||||||||| ||||| | |||||| |||| || || |||||||||||  |||||||||||| ||| || |||    
T  32612731 atattttctcaccatattggatgatcatagcagatttctatgggtcattcttttaaaatcaaagtcagaagtttctattcatgtgaaaatttttatcctc 32612632  T
Q  221 atgatcagaactcaatttcatctcac 246  Q
    ||||||| ||||||||||||| ||||    
T  32612631 atgatcaaaactcaatttcatgtcac 32612606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 157
Target Start/End: Original strand, 52777580 - 52777731
Alignment:
Q  6 ctaaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatttcata 105  Q
    ||||||| || |||||||||||   ||||||| | |||||||| ||||||||||||||||| |||||| |||| || ||||||||  | || ||| |||     
T  52777580 ctaaacataaacatttacctttcaattcaagtatttctcatgcttctaccaattttgaattacttcatcttgatatttggggtccattatctattgcatc 52777679  T
Q  106 tgtccatggccatagatattttctcactatacttgatgaccatagcagattt 157  Q
    ||| ||||| || ||||| ||||| |||||  | ||||| ||||||||||||    
T  52777680 tgtacatggtcacagatactttcttactattgtagatgatcatagcagattt 52777731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 157
Target Start/End: Complemental strand, 19587091 - 19586940
Alignment:
Q  6 ctaaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatttcata 105  Q
    ||||||| || |||||||||||   ||||||| | |||||||| ||||||||||||||||| |||||| |||| || ||||||||  | || ||| |||     
T  19587091 ctaaacataaacatttacctttcaattcaagtatttctcatgcttctaccaattttgaattacttcatcttgatatttggggtccattatctattgcatc 19586992  T
Q  106 tgtccatggccatagatattttctcactatacttgatgaccatagcagattt 157  Q
    ||| ||||| || ||||| ||||| |||||  | ||||| ||||||||||||    
T  19586991 tgtacatggtcacagatactttcttactattgtagatgatcatagcagattt 19586940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 157
Target Start/End: Original strand, 12285200 - 12285351
Alignment:
Q  6 ctaaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatttcata 105  Q
    ||||||| || |||||||||||   ||||||| | |||||||| |||||||||| |||||| |||||| |||| || ||||||||  | || ||| |||     
T  12285200 ctaaacataaacatttacctttcaattcaagtatttctcatgcttctaccaattatgaattacttcatcttgatatttggggtccattatctattgcatc 12285299  T
Q  106 tgtccatggccatagatattttctcactatacttgatgaccatagcagattt 157  Q
    ||| ||||| || ||||| ||||| |||||  | ||||| ||||||||||||    
T  12285300 tgtacatggtcacagatactttcttactattgtagatgatcatagcagattt 12285351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 4646323 - 4646295
Alignment:
Q  116 catagatattttctcactatacttgatga 144  Q
    |||||||||||||||||||||||||||||    
T  4646323 catagatattttctcactatacttgatga 4646295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 157
Target Start/End: Original strand, 10909 - 11060
Alignment:
Q  6 ctaaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatttcata 105  Q
    ||||||| || |||||||||||   ||| ||| | |||||||| ||||||||||||||||| |||||| |||| || ||||||||  | || ||| |||     
T  10909 ctaaacataaacatttacctttcaattccagtatttctcatgcttctaccaattttgaattacttcatcttgatatttggggtccattatctattgcatc 11008  T
Q  106 tgtccatggccatagatattttctcactatacttgatgaccatagcagattt 157  Q
    ||| ||||| || ||||| ||||| |||||  | ||||| ||||||||||||    
T  11009 tgtacatggtcacagatactttcttactattgtagatgatcatagcagattt 11060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 157
Target Start/End: Complemental strand, 22177322 - 22177171
Alignment:
Q  6 ctaaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatttcata 105  Q
    ||||||| || |||||||||||   ||| ||| | |||||||| ||||||||||||||||| |||||| |||| || ||||||||  | || ||| |||     
T  22177322 ctaaacataaacatttacctttcaattccagtatttctcatgcttctaccaattttgaattacttcatcttgatatttggggtccattatctattgcatc 22177223  T
Q  106 tgtccatggccatagatattttctcactatacttgatgaccatagcagattt 157  Q
    ||| ||||| || ||||| ||||| |||||  | ||||| ||||||||||||    
T  22177222 tgtacatggtcacagatactttcttactattgtagatgatcatagcagattt 22177171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 195
Target Start/End: Complemental strand, 18834281 - 18834149
Alignment:
Q  63 aattgcttcattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgatgaccatagcagatttttatg 162  Q
    |||||||||||||||||||| |||| || ||| | |||   |  || ||| | |||| ||||||||| |||||  |||||||||||| ||||||||||||    
T  18834281 aattgcttcattttgacatacggggaccccttgccattaattcagtacatagacataaatattttcttactattgttgatgaccataccagatttttatg 18834182  T
Q  163 gattattcttctaaagtctaaatcagaagtttc 195  Q
    ||| |||||| | || ||||| || ||||||||    
T  18834181 gatcattcttttgaaatctaagtctgaagtttc 18834149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 35087208 - 35087315
Alignment:
Q  110 catggccatagatattttctcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttcatgtgaaaa 209  Q
    ||||| ||||| |||||| | ||||||||||||||||||||||||||  | ||||||||| | || ||| | ||| | ||||| || || ||||| ||||    
T  35087208 catggtcataggtattttttgactatacttgatgaccatagcagattcctttggattattttacttaagaccaaagctgaagtctctctccatgtcaaaa 35087307  T
Q  210 atttcatt 217  Q
    ||||||||    
T  35087308 atttcatt 35087315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 34891252 - 34891091
Alignment:
Q  8 aaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatttcatatg 107  Q
    |||||||| ||| | |||||| |||| |||||||||||||| ||  |||||||||||||| | ||| |||| ||||| || ||| | ||  |||||| ||    
T  34891252 aaacaaaaacatatcccttttacttccagtttatctcatgcatcatccaattttgaattgttgcatcttgatatatgaggccctttgtctgtttcatctg 34891153  T
Q  108 tccatggccatagatattttctcactatacttgatgaccatagcagatttttatggattatt 169  Q
    | |||||||| |  |||||| | || ||  ||||||| ||||| |||||| |||||||||||    
T  34891152 ttcatggccacaagtattttttaaccattgttgatgatcatagtagatttctatggattatt 34891091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 29499342 - 29499430
Alignment:
Q  2 ttttctaaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgcttcattttgacatatggggtcc 90  Q
    ||||||||||| || |||||| ||||| |||| |||   | |||||| ||||||||||||||| |  ||||| ||||||| ||||||||    
T  29499342 ttttctaaacataaacatttatcttttacttctagtaattatcatgcttctaccaattttgaacttattcatcttgacatttggggtcc 29499430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 13751 - 13853
Alignment:
Q  115 ccatagatattttctcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttcatgtgaaaaatttc 214  Q
    |||||||||||||||||| || ||||||||  | || |||||| | |||||| ||||| |||| || ||||| |||||||| |  ||||| ||||| |||    
T  13751 ccatagatattttctcaccattcttgatgattacagtagatttgtttggattgttcttttaaaatcaaaatctgaagtttctcaacatgttaaaaacttc 13850  T
Q  215 att 217  Q
    |||    
T  13851 att 13853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 19653410 - 19653512
Alignment:
Q  115 ccatagatattttctcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttcatgtgaaaaatttc 214  Q
    |||||||||||||||||| || ||||||||  | || |||||| | |||||| ||||| |||| || ||||| |||||||| |  ||||| ||||| |||    
T  19653410 ccatagatattttctcaccattcttgatgattacagtagatttgtttggattgttcttttaaaatcaaaatctgaagtttctcaacatgttaaaaacttc 19653509  T
Q  215 att 217  Q
    |||    
T  19653510 att 19653512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 3820209 - 3820156
Alignment:
Q  121 atattttctcactatacttgatgaccatagcagatttttatggattattcttct 174  Q
    ||||||||||||||| |||||||| ||||| |||| | | ||||||||||||||    
T  3820209 atattttctcactattcttgatgatcatagtagatatgtttggattattcttct 3820156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University