View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16569_low_97 (Length: 249)
Name: NF16569_low_97
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16569_low_97 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 5301 - 5059
Alignment:
| Q |
1 |
tttatttgctttgtctgcagtcacgatttcacgctcacgaagtcaacacattggtagccattaaatcgagatcgcacgttgcagatttcaagctcgatat |
100 |
Q |
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| T |
5301 |
tttatttgctttgtctgcagtcacgatttcacgctcacgaagtcaacacatcggtagccattaaatcgagatcgcacgttgcagatttcaagctcgatat |
5202 |
T |
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| Q |
101 |
tt-agagtgaaaaaatatcaaaacctgcttgctttctacaccgttcgaacccgatccaaggactaccgatgtgttgacttcatgaatgtgtgggattgtg |
199 |
Q |
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| T |
5201 |
tttagagtgaaaaaaaatcaaaacctgcttgctttctacaccgttcgaacccgatccaaggactaccgatgtgttgacttcatgaatgtgtgggattgtg |
5102 |
T |
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| Q |
200 |
attgcatgcaatccgaagccttttcaatatgttatttcatctc |
242 |
Q |
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| T |
5101 |
attgcatgcaatccgaagccttttcaatatgttatttcatctc |
5059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 5301 - 5059
Alignment:
| Q |
1 |
tttatttgctttgtctgcagtcacgatttcacgctcacgaagtcaacacattggtagccattaaatcgagatcgcacgttgcagatttcaagctcgatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5301 |
tttatttgctttgtctgcagtcacgatttcacgctcacgaagtcaacacatcggtagccattaaatcgagatcgcacgttgcagatttcaagctcgatat |
5202 |
T |
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| Q |
101 |
tt-agagtgaaaaaatatcaaaacctgcttgctttctacaccgttcgaacccgatccaaggactaccgatgtgttgacttcatgaatgtgtgggattgtg |
199 |
Q |
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| T |
5201 |
tttagagtgaaaaaaaatcaaaacctgcttgctttctacaccgttcgaacccgatccaaggactaccgatgtgttgacttcatgaatgtgtgggattgtg |
5102 |
T |
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| Q |
200 |
attgcatgcaatccgaagccttttcaatatgttatttcatctc |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5101 |
attgcatgcaatccgaagccttttcaatatgttatttcatctc |
5059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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