View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16569_low_98 (Length: 249)

Name: NF16569_low_98
Description: NF16569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16569_low_98
NF16569_low_98
[»] chr7 (32 HSPs)
chr7 (98-238)||(1599604-1599744)
chr7 (98-238)||(38229518-38229658)
chr7 (98-238)||(43543184-43543324)
chr7 (98-230)||(41407915-41408047)
chr7 (98-230)||(47254498-47254630)
chr7 (112-238)||(46160506-46160634)
chr7 (149-236)||(595311-595398)
chr7 (149-236)||(38226274-38226361)
chr7 (149-238)||(1600477-1600566)
chr7 (149-238)||(33981435-33981524)
chr7 (98-238)||(19064114-19064248)
chr7 (150-238)||(46159693-46159781)
chr7 (149-226)||(33980617-33980694)
chr7 (146-226)||(585047-585127)
chr7 (149-238)||(42832035-42832124)
chr7 (149-208)||(43544077-43544136)
chr7 (149-212)||(41407823-41407886)
chr7 (184-238)||(42832862-42832916)
chr7 (98-148)||(43544999-43545049)
chr7 (151-209)||(47253692-47253750)
chr7 (99-148)||(41406135-41406184)
chr7 (98-144)||(596213-596259)
chr7 (98-148)||(37708194-37708244)
chr7 (99-148)||(38224535-38224584)
chr7 (98-148)||(33982418-33982468)
chr7 (113-151)||(37623981-37624019)
chr7 (98-148)||(42825801-42825851)
chr7 (98-148)||(42833827-42833877)
chr7 (113-145)||(33979577-33979609)
chr7 (112-141)||(585998-586027)
chr7 (107-148)||(1602229-1602270)
chr7 (112-148)||(47252177-47252213)
[»] chr3 (37 HSPs)
chr3 (98-238)||(42879463-42879603)
chr3 (99-238)||(48073683-48073822)
chr3 (98-238)||(39131700-39131840)
chr3 (101-238)||(42164154-42164291)
chr3 (98-238)||(43862339-43862479)
chr3 (149-238)||(43861547-43861636)
chr3 (149-238)||(50937417-50937506)
chr3 (151-238)||(39130891-39130978)
chr3 (149-238)||(22978865-22978954)
chr3 (149-238)||(42878649-42878738)
chr3 (146-238)||(43358488-43358581)
chr3 (146-238)||(48072877-48072969)
chr3 (149-238)||(22979684-22979773)
chr3 (121-238)||(36465842-36465962)
chr3 (149-238)||(2228384-2228473)
chr3 (98-238)||(36471561-36471693)
chr3 (149-238)||(50936601-50936690)
chr3 (158-238)||(42165017-42165097)
chr3 (149-238)||(7042568-7042654)
chr3 (98-148)||(41889524-41889574)
chr3 (98-148)||(42167435-42167485)
chr3 (98-148)||(42877186-42877236)
chr3 (98-146)||(41888755-41888803)
chr3 (106-148)||(2229273-2229315)
chr3 (98-148)||(48071922-48071972)
chr3 (98-148)||(50938340-50938390)
chr3 (101-148)||(43860675-43860722)
chr3 (113-151)||(32001045-32001083)
chr3 (113-151)||(55136449-55136487)
chr3 (116-149)||(7041694-7041727)
chr3 (98-134)||(22732523-22732559)
chr3 (98-137)||(22731626-22731665)
chr3 (203-238)||(22732302-22732337)
chr3 (98-141)||(22978024-22978067)
chr3 (101-148)||(39129249-39129296)
chr3 (106-148)||(43359385-43359427)
chr3 (98-135)||(54409563-54409600)
[»] chr2 (30 HSPs)
chr2 (101-238)||(39160045-39160182)
chr2 (101-238)||(39209012-39209149)
chr2 (98-234)||(18248398-18248534)
chr2 (149-238)||(14453948-14454037)
chr2 (149-238)||(36601848-36601937)
chr2 (98-238)||(21191580-21191714)
chr2 (149-238)||(6321184-6321273)
chr2 (149-238)||(33180624-33180713)
chr2 (149-236)||(18247552-18247639)
chr2 (149-238)||(6320369-6320458)
chr2 (149-238)||(33179799-33179888)
chr2 (149-238)||(14453130-14453219)
chr2 (98-148)||(18246637-18246687)
chr2 (98-148)||(24520321-24520371)
chr2 (98-148)||(36602835-36602885)
chr2 (98-147)||(6319483-6319532)
chr2 (98-148)||(6322243-6322293)
chr2 (98-148)||(14454465-14454515)
chr2 (98-140)||(33182680-33182722)
chr2 (113-151)||(20919764-20919802)
chr2 (113-151)||(27478954-27478992)
chr2 (98-140)||(36600883-36600925)
chr2 (99-137)||(40495328-40495366)
chr2 (99-151)||(24460615-24460667)
chr2 (203-238)||(6644928-6644963)
chr2 (98-141)||(33178907-33178950)
chr2 (98-148)||(38932341-38932391)
chr2 (200-238)||(40495109-40495147)
chr2 (98-151)||(518238-518291)
chr2 (114-147)||(14452263-14452296)
[»] chr4 (37 HSPs)
chr4 (98-238)||(8080939-8081079)
chr4 (98-238)||(43938390-43938529)
chr4 (98-238)||(26918319-26918459)
chr4 (100-238)||(31623365-31623503)
chr4 (101-212)||(7111745-7111856)
chr4 (102-238)||(30112857-30112993)
chr4 (98-232)||(51943432-51943565)
chr4 (149-238)||(10657016-10657105)
chr4 (149-238)||(10871161-10871250)
chr4 (149-238)||(43939260-43939349)
chr4 (149-238)||(50791601-50791690)
chr4 (149-238)||(51942613-51942702)
chr4 (146-238)||(8079608-8079700)
chr4 (153-238)||(49647702-49647787)
chr4 (98-188)||(40846583-40846673)
chr4 (149-236)||(26919178-26919265)
chr4 (155-238)||(49646901-49646984)
chr4 (149-238)||(10657835-10657924)
chr4 (149-238)||(10871980-10872069)
chr4 (98-169)||(43594093-43594161)
chr4 (98-148)||(49645971-49646021)
chr4 (98-148)||(10658986-10659036)
chr4 (98-148)||(10873131-10873181)
chr4 (98-148)||(24577739-24577789)
chr4 (98-140)||(48952976-48953018)
chr4 (98-148)||(50790770-50790820)
chr4 (98-148)||(50792519-50792569)
chr4 (98-151)||(47650663-47650716)
chr4 (101-148)||(31624501-31624548)
chr4 (98-148)||(43590480-43590530)
chr4 (112-148)||(19871076-19871112)
chr4 (198-238)||(43590656-43590696)
chr4 (108-148)||(43940204-43940244)
chr4 (112-148)||(51941063-51941099)
chr4 (98-141)||(38623448-38623491)
chr4 (98-140)||(19869906-19869948)
chr4 (98-148)||(26923642-26923692)
[»] chr5 (20 HSPs)
chr5 (101-238)||(8525536-8525673)
chr5 (98-238)||(34858466-34858606)
chr5 (98-238)||(5100425-5100565)
chr5 (98-238)||(37250366-37250506)
chr5 (98-238)||(29639520-29639660)
chr5 (98-238)||(29640198-29640337)
chr5 (98-212)||(3035679-3035793)
chr5 (149-238)||(3034866-3034955)
chr5 (149-238)||(15525199-15525288)
chr5 (149-238)||(5101230-5101319)
chr5 (149-238)||(15526024-15526111)
chr5 (149-238)||(8524723-8524812)
chr5 (98-221)||(29390730-29390847)
chr5 (148-212)||(34859376-34859440)
chr5 (98-146)||(29389171-29389219)
chr5 (98-148)||(8520443-8520493)
chr5 (98-148)||(37256212-37256262)
chr5 (149-196)||(37252535-37252582)
chr5 (192-236)||(37251228-37251272)
chr5 (114-151)||(6719689-6719726)
[»] scaffold0014 (3 HSPs)
scaffold0014 (106-238)||(69684-69816)
scaffold0014 (146-238)||(70657-70749)
scaffold0014 (98-148)||(71655-71705)
[»] chr8 (26 HSPs)
chr8 (98-238)||(31640303-31640443)
chr8 (98-238)||(41671224-41671364)
chr8 (149-238)||(35021145-35021234)
chr8 (149-238)||(38362732-38362821)
chr8 (149-238)||(38363551-38363640)
chr8 (143-238)||(26920323-26920418)
chr8 (149-236)||(41670446-41670533)
chr8 (149-238)||(35021964-35022053)
chr8 (149-238)||(19142043-19142132)
chr8 (143-238)||(26951041-26951136)
chr8 (176-238)||(26950253-26950315)
chr8 (146-238)||(31641182-31641265)
chr8 (98-148)||(19143025-19143075)
chr8 (98-148)||(35019433-35019483)
chr8 (98-151)||(39069028-39069081)
chr8 (98-149)||(23625855-23625906)
chr8 (98-148)||(15825739-15825789)
chr8 (98-136)||(26920411-26920449)
chr8 (106-148)||(31642852-31642894)
chr8 (98-148)||(43129536-43129586)
chr8 (98-134)||(5586993-5587029)
chr8 (203-238)||(5587215-5587250)
chr8 (98-137)||(5587887-5587926)
chr8 (101-148)||(29725690-29725737)
chr8 (98-136)||(26951129-26951167)
chr8 (98-148)||(38364574-38364624)
[»] chr1 (10 HSPs)
chr1 (98-238)||(23260786-23260924)
chr1 (146-238)||(23260104-23260196)
chr1 (155-238)||(4639228-4639311)
chr1 (98-148)||(44110035-44110085)
chr1 (98-148)||(44300047-44300097)
chr1 (98-149)||(4638339-4638390)
chr1 (98-148)||(4640196-4640246)
chr1 (98-148)||(43847532-43847582)
chr1 (98-148)||(11756975-11757025)
chr1 (101-140)||(42159561-42159600)
[»] chr6 (13 HSPs)
chr6 (98-238)||(13868979-13869119)
chr6 (149-238)||(13868184-13868273)
chr6 (146-239)||(24160173-24160266)
chr6 (149-238)||(15509070-15509159)
chr6 (186-238)||(12503660-12503712)
chr6 (149-238)||(32561570-32561652)
chr6 (98-148)||(5090187-5090237)
chr6 (101-148)||(24159187-24159234)
chr6 (98-148)||(34574698-34574748)
chr6 (98-147)||(15508295-15508344)
chr6 (149-212)||(32560768-32560831)
chr6 (98-148)||(13866210-13866260)
chr6 (98-140)||(32562522-32562564)
[»] scaffold0217 (3 HSPs)
scaffold0217 (98-189)||(850-941)
scaffold0217 (149-238)||(20319-20408)
scaffold0217 (192-238)||(19541-19587)
[»] scaffold0009 (1 HSPs)
scaffold0009 (98-148)||(94507-94557)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 1599604 - 1599744
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||    
T  1599604 cactgtagggcttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccattccaaaacctagaacacacataacg 1599703  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  1599704 tgcaatttcttcttcattcttcttttcatcttgattgttca 1599744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 38229658 - 38229518
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||| | ||||||    
T  38229658 cactatagggcttgtaacaattaaaatttcacatcaaattcaacccatcatatatgttcataaattttgttccattgcaaaacctagaacatacataacg 38229559  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  38229558 tgcaatttcttcttcattcttcttcccatcttgattgttca 38229518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 43543184 - 43543324
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||  ||||| ||||||    
T  43543184 cactatagggcttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttcccttccaaaacctaggacacacataacg 43543283  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||  ||| |||||||||||    
T  43543284 tgcaatttcttcttcattcttcttctcattttgattgttca 43543324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 98 - 230
Target Start/End: Complemental strand, 41408047 - 41407915
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||  |||||||| ||||||  |||||    
T  41408047 cactatagggcttgtaacaattaaaatttcacatcaaattcaacccatcatatatgttcataaattttgttccattaaaaaacctagaacacatgtaacg 41407948  T
Q  198 tgcaatttcttcttcattcttctttccatcttg 230  Q
    |||||||||||||||||||||||| ||||||||    
T  41407947 tgcaatttcttcttcattcttcttcccatcttg 41407915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 98 - 230
Target Start/End: Complemental strand, 47254630 - 47254498
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||| ||||||    
T  47254630 cactataggtcttgtaacaattaaaatttcacatcaaattcaacgcatcatatacgttcataaattttgttacattccaaaacctagaacacacataacg 47254531  T
Q  198 tgcaatttcttcttcattcttctttccatcttg 230  Q
    |||||||||||||||||| ||||| ||||||||    
T  47254530 tgcaatttcttcttcatttttcttcccatcttg 47254498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 112 - 238
Target Start/End: Complemental strand, 46160634 - 46160506
Alignment:
Q  112 taacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaa---acctaaaacacagataacgtgcaatttctt 208  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||   ||  |||||||| |||| ||||||||||||    
T  46160634 taacaattaaaatttcacatcaaattcaacacatcatatacgttcataaattttgttccattccaaaattactaaaaacacacataatgtgcaatttctt 46160535  T
Q  209 cttcattcttctttccatcttgattgttca 238  Q
    ||||| ||||| ||||||||||||||||||    
T  46160534 cttcactcttc-ttccatcttgattgttca 46160506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 595398 - 595311
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgtt 236  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  595398 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgtt 595311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 38226274 - 38226361
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgtt 236  Q
    ||||||||||||||||||||||||| ||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  38226274 atacgttcataaattttgttccattccaaaacctagaacacgcataacgtgcaatttcttcttcattcttctttccatcttgattgtt 38226361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 1600566 - 1600477
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| || ||||||||||||||||    
T  1600566 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttattcccatcttgattgttca 1600477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 33981524 - 33981435
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  33981524 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgtaatttcttcttcattcttctttccatcttgattcttca 33981435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 19064114 - 19064248
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||  ||||       ||||||||||  ||||||| |||||||||||||| | |||||     
T  19064114 cactataaggcttgtaacaattaaaatttcacatcaaattcaacctatcaa------tcataaatttgattccattccaaaacctaaaacagacataacc 19064207  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  19064208 tgcagtttcttcttcattcttcttcccatcttgattgttca 19064248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 46159693 - 46159781
Alignment:
Q  150 tacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||||| | ||||||| ||| || ||||||||||||||||||||||||||||||  |||||||||||||||    
T  46159693 tacgttcataaattttgttccattcctaaacctagaacgcacataacgtgcaatttcttcttcattcttcttctcatcttgattgttca 46159781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 33980617 - 33980694
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccat 226  Q
    ||||||||||||||||||||||||| ||||||||| ||| || |||||||||||||||||||||||||||||| ||||    
T  33980617 atacgttcataaattttgttccattccaaaacctagaactcacataacgtgcaatttcttcttcattcttcttcccat 33980694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 585127 - 585047
Alignment:
Q  146 catatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccat 226  Q
    |||||||||||||||||||||||||||| ||||||||| |||| | ||||| |||||||||||||||||||||||| ||||    
T  585127 catatacgttcataaattttgttccattccaaaacctagaacatacataacatgcaatttcttcttcattcttcttcccat 585047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 42832035 - 42832124
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||||||  |||| ||| |||||| |||||||||||||||||||||||| || |  ||||||||||||||||    
T  42832035 atacgttcataaattttgttccattctaaaatctagaacacacataacgtgcaatttcttcttcatttttttacccatcttgattgttca 42832124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 43544136 - 43544077
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttctt 208  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  43544136 atacgttcataaattttgttccattccaaaacctataacacacataacgtgcaatttctt 43544077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 41407823 - 41407886
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttc 212  Q
    ||||||||||| ||||||||||||| ||||| ||| |||||| |||||||||||||||||||||    
T  41407823 atacgttcatagattttgttccattccaaaatctagaacacacataacgtgcaatttcttcttc 41407886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 42832916 - 42832862
Alignment:
Q  184 aaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||| |||||||||||||||||||||||||||||  ||||||||||||||||    
T  42832916 aaacacacataacgtgcaatttcttcttcattcttctccccatcttgattgttca 42832862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 43545049 - 43544999
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  43545049 cactatagggcttttaacaattaaaatttcacatcaaattcaacccatcat 43544999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 47253692 - 47253750
Alignment:
Q  151 acgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttc 209  Q
    ||||||||||| ||||||||||| ||||||||| |||||| ||||||||||||||||||    
T  47253692 acgttcataaaatttgttccattccaaaacctagaacacacataacgtgcaatttcttc 47253750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 41406135 - 41406184
Alignment:
Q  99 actatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  41406135 actatagggcttgtaacaattaaaatttcacatcaaattcaacccatcat 41406184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 596259 - 596213
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactca 144  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  596259 cactataggacttgtaacaattaaaatttcacatcaaattcaactca 596213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 37708244 - 37708194
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||| ||||| |||||||||||||||||||||||||||||| ||||||    
T  37708244 cactatatggcttgtaacaattaaaatttcacatcaaattcaacccatcat 37708194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 38224535 - 38224584
Alignment:
Q  99 actatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||| ||| |||||||||||||||||||||||||||||| ||||||    
T  38224535 actataggacttgtaacaattaaaatttcacatcaaattcaacccatcat 38224584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 33982468 - 33982418
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||| ||| |||||||||| ||||||||||||||||||| ||||||    
T  33982468 cactataggacttgtaacaattaacatttcacatcaaattcaacacatcat 33982418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 37624019 - 37623981
Alignment:
Q  113 aacaattaaaatttcacatcaaattcaactcatcatata 151  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  37624019 aacaattaaaatttcacatcaaattcaacccatcatata 37623981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 42825801 - 42825851
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||||| || ||||||||||||||||||||||||||| || ||||||    
T  42825801 cactatagggtttgtaacaattaaaatttcacatcaaattccacccatcat 42825851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 42833877 - 42833827
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||||||||  ||||||||||||||||||||||||| ||| ||||||    
T  42833877 cactatagggcttgaaacaattaaaatttcacatcaaatttaacccatcat 42833827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 33979577 - 33979609
Alignment:
Q  113 aacaattaaaatttcacatcaaattcaactcat 145  Q
    |||||||||||||||||||||||||||||||||    
T  33979577 aacaattaaaatttcacatcaaattcaactcat 33979609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 141
Target Start/End: Complemental strand, 586027 - 585998
Alignment:
Q  112 taacaattaaaatttcacatcaaattcaac 141  Q
    ||||||||||||||||||||||||||||||    
T  586027 taacaattaaaatttcacatcaaattcaac 585998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 1602270 - 1602229
Alignment:
Q  107 gcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||| ||||||||||||||| |||||||||||||| ||||||    
T  1602270 gcttgtaacaattaaaattttacatcaaattcaacccatcat 1602229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 47252177 - 47252213
Alignment:
Q  112 taacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||||||||||||||||||||| || ||||||    
T  47252177 taacaattaaaatttcacatcaaattctacccatcat 47252213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 42879603 - 42879463
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  42879603 cactatagggcttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccattccaaaacctaaaacacacataacg 42879504  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||   ||||||||||||||    
T  42879503 tgcaatttcttcttcattcttcttcttatcttgattgttca 42879463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 48073822 - 48073683
Alignment:
Q  99 actatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacgt 198  Q
    |||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |||||| |||| ||    
T  48073822 actatagggcttgtaaaaattaaaatttcacatcaaattcaacccatcatatacgttcatatattttgttccattccaaaacctagaacacacataatgt 48073723  T
Q  199 gcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  48073722 gcaatttcttcttcattcttcttcccatcttgattgttca 48073683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 39131840 - 39131700
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| |||||| |||||     
T  39131840 cactatagggcttgtaacaattaaaatttcacatcaaattcaactcattatatacgttcataaattttgttccattccaaaatctagaacacacataaca 39131741  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||| |||||  |||||||||||||||    
T  39131740 tgcaatttcttcttcattattcttctcatcttgattgttca 39131700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 42164154 - 42164291
Alignment:
Q  101 tatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgc 200  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||   |||||||||    
T  42164154 tatagggcttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgtttcattccaaaacctagaacatgcataacgtgc 42164253  T
Q  201 aatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||| |||||||| |||||  |||||||||||||||    
T  42164254 aatttcctcttcatttttcttctcatcttgattgttca 42164291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 43862479 - 43862339
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    |||||||| |||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| ||||   ||||||    
T  43862479 cactatagagcttgtaacaattaaaatttcacatcaaattcaacccatcatatactttcataaattttgttccattccaaaacctagaacatgcataacg 43862380  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||| |||||||| ||||| | ||||||||||||||    
T  43862379 tgcaatttcctcttcatttttcttcctatcttgattgttca 43862339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 43861547 - 43861636
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  43861547 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgaaatttcttcttcattcttcttcccatcttgattgttca 43861636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 50937506 - 50937417
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||  |||||||||||||||    
T  50937506 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttctcatcttgattgttca 50937417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 39130891 - 39130978
Alignment:
Q  151 acgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||| |||| |||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  39130891 acgttcataaattttgttccattccaaatcctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 39130978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 22978865 - 22978954
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||||||| |||||||| |||| | ||||||||||||||||||||||||||||||  |||||||||||||||    
T  22978865 atacgttcataaattttgttccatttaaaaacctagaacatatataacgtgcaatttcttcttcattcttcttctcatcttgattgttca 22978954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 42878649 - 42878738
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  42878649 atacgttcataaattttgttccattccaaaacctagaacacacataaagtgcaatttcttcttgattcttcttcccatcttgattgttca 42878738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 43358581 - 43358488
Alignment:
Q  146 catatacgttcataaattttgttccatttc-aaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| |||||||||| || ||||||||||||||||    
T  43358581 catatacgttcataaattttgttccatttccaaaacctagaacacacataacgtgcaatttctacttcattctttttcccatcttgattgttca 43358488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 48072877 - 48072969
Alignment:
Q  146 catatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||| ||||||||||||||||||| ||| |||| |||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  48072877 catacacgttcataaattttgttcaattccaaaccctagaacacacataacgtgcaatttcttcttcattcttttttccatcttgattgttca 48072969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 22979773 - 22979684
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| ||||| ||| |||||| |||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  22979773 atacgttcataaattttgttccattccaaaaactagaacacacataacgtgaaatttcttcttcattattcttgccatcttgattgttca 22979684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 36465842 - 36465962
Alignment:
Q  121 aaatttcacatcaaattcaactca----tcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattc 216  Q
    ||||||||||||||||||| | ||    |||||||||||||||||||||||||||||  |||||||| |||||| ||||| |||||||||||||||| ||    
T  36465842 aaatttcacatcaaattcatcccatcattcatatacgttcataaattttgttccattcaaaaacctagaacacacataacctgcaatttcttcttca-tc 36465940  T
Q  217 ttctttccatcttgattgttca 238  Q
    ||||| |||| |||||||||||    
T  36465941 ttcttcccatgttgattgttca 36465962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 2228473 - 2228384
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||| |||| |||||| || |||||| ||||||||||||||||| ||||||||| || ||||||||||||||||    
T  2228473 atacgttcataaattttgtttcattccaaaacttagaacacacataacgtgcaatttctttttcattctttttcccatcttgattgttca 2228384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 36471693 - 36471561
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||||||| |||||||||||||||||||||||||| ||  ||| ||  ||||||||||||||||||||||| ||||||||| |||| | | |       
T  36471693 cactatagggcttgtaacaattaaaatttcacatcaaatttaa--cat-atgcacgttcataaattttgttccattccaaaacctagaacagacaca--- 36471600  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
      |||||||||||| ||||||||| ||||||||||||||||    
T  36471599 --caatttcttcttaattcttcttcccatcttgattgttca 36471561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 50936601 - 50936690
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| ||||||||| |||||| | |||||| |||||||||||||||||| ||  |||||||||||||||    
T  50936601 atacgttcataaattttgttccattccaaaacctagaacacacacaacgtgaaatttcttcttcattctttttctcatcttgattgttca 50936690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 42165097 - 42165017
Alignment:
Q  158 taaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||| || |||| ||||||||| |||||| |||||||||||||||||||||||||||||| || |||||||||||||    
T  42165097 taaattttatttcattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccttcttgattgttca 42165017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 7042568 - 7042654
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||||||  |||||| | |||    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  7042568 atacgttcataaattttgttccattctaaaacccagaacc---ataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 7042654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 41889574 - 41889524
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  41889574 cactatagggcttgtaacaattaaaatttcacatcaaattcaacccatcat 41889524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 42167485 - 42167435
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  42167485 cactatagggcttgtaacaattaaaatttcacatcaaattcaacccatcat 42167435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 42877186 - 42877236
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  42877186 cactatagggcttgtaacaattaaaatttcacatcaaattcaacccatcat 42877236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 41888755 - 41888803
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatc 146  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  41888755 cactatacggcttgtaacaattaaaatttcacatcaaattcaactcatc 41888803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 2229315 - 2229273
Alignment:
Q  106 ggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  2229315 ggcttgtaacaattaaaatttcacatcaaattcaactcatcat 2229273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 48071922 - 48071972
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||||||    
T  48071922 cactatagggcttgtaacagttaaaatttcacatcaaattcaacccatcat 48071972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 50938390 - 50938340
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||| ||||| |||||||||||||||||||||||||||||| ||||||    
T  50938390 cactatatggcttgtaacaattaaaatttcacatcaaattcaacccatcat 50938340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 43860675 - 43860722
Alignment:
Q  101 tatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  43860675 tatagggcttgtaataattaaaatttcacatcaaattcaacccatcat 43860722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 32001083 - 32001045
Alignment:
Q  113 aacaattaaaatttcacatcaaattcaactcatcatata 151  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  32001083 aacaattaaaatttcacatcaaattcaacccatcatata 32001045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 55136487 - 55136449
Alignment:
Q  113 aacaattaaaatttcacatcaaattcaactcatcatata 151  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  55136487 aacaattaaaatttcacatcaaattcaacccatcatata 55136449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 7041694 - 7041727
Alignment:
Q  116 aattaaaatttcacatcaaattcaactcatcata 149  Q
    ||||||||||||||||||||||||||||||||||    
T  7041694 aattaaaatttcacatcaaattcaactcatcata 7041727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 22732559 - 22732523
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaa 134  Q
    ||||||||||||| |||||||||||||||||||||||    
T  22732559 cactatagggcttataacaattaaaatttcacatcaa 22732523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 22731626 - 22731665
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaatt 137  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  22731626 cactatagggtttctaacaattaaaatttcacattaaatt 22731665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 22732337 - 22732302
Alignment:
Q  203 tttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||||| |||||||||||    
T  22732337 tttcttcttcattcttctttccattttgattgttca 22732302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 22978024 - 22978067
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaac 141  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||    
T  22978024 cactatatgacttgtaacaattaaaatttcacatcaaattcaac 22978067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 39129249 - 39129296
Alignment:
Q  101 tatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||||| |||||||||||||||  ||||||||||||| ||||||    
T  39129249 tatagggcttgtaacaattaaaattttgcatcaaattcaacccatcat 39129296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 43359427 - 43359385
Alignment:
Q  106 ggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||    
T  43359427 ggcttgtaacaattaaaatttcacaccaaattcaacccatcat 43359385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 54409563 - 54409600
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaa 135  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  54409563 cactataggtcttgtaacaattaaaatttcacatcaaa 54409600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 39160045 - 39160182
Alignment:
Q  101 tatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgc 200  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |    
T  39160045 tatagggcttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaacacacataacgtac 39160144  T
Q  201 aatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  39160145 aatttcttcttcattcttcttcccatcttgattgttca 39160182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 39209149 - 39209012
Alignment:
Q  101 tatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgc 200  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |    
T  39209149 tatagggcttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaacacacataacgtac 39209050  T
Q  201 aatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  39209049 aatttcttcttcattcttcttcccatcttgattgttca 39209012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 98 - 234
Target Start/End: Complemental strand, 18248534 - 18248398
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| ||| || ||||||    
T  18248534 cactatagggcttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgtttcattccaaaacctagaacgcaaataacg 18248435  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattg 234  Q
     ||||||||||||||||||||||| ||||||||||||    
T  18248434 cgcaatttcttcttcattcttcttcccatcttgattg 18248398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 14454037 - 14453948
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  14454037 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 14453948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 36601937 - 36601848
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  36601937 atacgttcataaattttgttctatttcaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 36601848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 21191714 - 21191580
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||||||| |||||||||||||||||||||||||| |||  ||||       |||||||||| |||||||| |||||||||||||| | |||||     
T  21191714 cactatagggcttgtaacaattaaaatttcacatcaaatttaacctatcaa------tcataaatttggttccattccaaaacctaaaacagacataacc 21191621  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  21191620 tgcagtttcttcttcattcttcttcccatcttgattgttca 21191580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 6321273 - 6321184
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| |||||| || || ||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  6321273 atacgttcataaattttgttccattccaaaacatagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 6321184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 33180713 - 33180624
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||||||  |||| ||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  33180713 atacgttcataaattttgttccattctaaaatctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 33180624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 18247552 - 18247639
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgtt 236  Q
    ||||||||||||||||||||||||| ||||||||| |||| | ||||||||||||||| |||||||||||||| ||||||||||||||    
T  18247552 atacgttcataaattttgttccattccaaaacctagaacaaacataacgtgcaatttcatcttcattcttcttcccatcttgattgtt 18247639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 6320369 - 6320458
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||||||  |||||||| |||||| ||||||||||||||||||||||||||| || ||||||| ||||||||    
T  6320369 atacgttcataaattttgttccattctaaaacctataacacacataacgtgcaatttcttcttcattctttttcccatctttattgttca 6320458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 33179799 - 33179888
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||| ||| ||||||| ||||||||| |||||| ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  33179799 atacgttcataaaattttttccattccaaaacctagaacacacataacgtgcaatttctttttcattcttcttcccatcttgattgttca 33179888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 14453130 - 14453219
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||  || |||||  || |||| | |||||||||||||||||||||||||||||| ||||||||||||||||    
T  14453130 atacgttcataaattttgttcagttccaaaatatagaacatacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 14453219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 18246637 - 18246687
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  18246637 cactatagggcttgtaacaattaaaatttcacatcaaattcaacccatcat 18246687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 24520371 - 24520321
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  24520371 cactatagggcttgtaacaattaaaatttcacatcaaattcaacccatcat 24520321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 36602885 - 36602835
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  36602885 cactataaggcttataacaattaaaatttcacatcaaattcaactcatcat 36602835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 6319483 - 6319532
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatca 147  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  6319483 cactatagggcttgtaacaattaaaatttcacatcaaattcaacccatca 6319532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 6322293 - 6322243
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||||||| ||||||||||||||||| |||||||||||| ||||||    
T  6322293 cactatagggcttgtaacaattaaaatttcatatcaaattcaacccatcat 6322243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 14454515 - 14454465
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||| ||||| |||||||||||||||||||||||||||||| ||||||    
T  14454515 cactatatggcttgtaacaattaaaatttcacatcaaattcaacccatcat 14454465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 33182722 - 33182680
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaa 140  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  33182722 cactatagggcttgtaacaattaaaatttcacatcaaattcaa 33182680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 20919802 - 20919764
Alignment:
Q  113 aacaattaaaatttcacatcaaattcaactcatcatata 151  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  20919802 aacaattaaaatttcacatcaaattcaacccatcatata 20919764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 27478992 - 27478954
Alignment:
Q  113 aacaattaaaatttcacatcaaattcaactcatcatata 151  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  27478992 aacaattaaaatttcacatcaaattcaacccatcatata 27478954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 36600883 - 36600925
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaa 140  Q
    ||||||| ||||| |||||||||||||||||||||||||||||    
T  36600883 cactatatggcttgtaacaattaaaatttcacatcaaattcaa 36600925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 40495366 - 40495328
Alignment:
Q  99 actatagggcttctaacaattaaaatttcacatcaaatt 137  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  40495366 actatagggcttataacaattaaaatttcacatcaaatt 40495328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 24460667 - 24460615
Alignment:
Q  99 actatagggcttctaacaattaaaatttcacatcaaattcaactcatcatata 151  Q
    |||||||| |||  ||||||||||||||||||||||||||||  |||||||||    
T  24460667 actataggtcttgcaacaattaaaatttcacatcaaattcaatccatcatata 24460615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 6644928 - 6644963
Alignment:
Q  203 tttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||| |||||||||||||||||||||||||||||    
T  6644928 tttctttttcattcttctttccatcttgattgttca 6644963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 33178907 - 33178950
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaac 141  Q
    ||||||| ||||| ||||||||||||||| ||||||||||||||    
T  33178907 cactataaggcttgtaacaattaaaattttacatcaaattcaac 33178950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 38932391 - 38932341
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||||| || ||||||||||||||| |||||||||| ||| ||||||    
T  38932391 cactatagggtttgtaacaattaaaattttacatcaaattgaacccatcat 38932341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 40495147 - 40495109
Alignment:
Q  200 caatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  40495147 caatttcttcttcattcttcttcccattttgattgttca 40495109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 518238 - 518291
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatata 151  Q
    ||||||||| |||  || ||||||||||||||||||||| |||| |||||||||    
T  518238 cactataggtcttgcaaaaattaaaatttcacatcaaatccaacccatcatata 518291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 14452263 - 14452296
Alignment:
Q  114 acaattaaaatttcacatcaaattcaactcatca 147  Q
    |||||||||||||||||||||||||||| |||||    
T  14452263 acaattaaaatttcacatcaaattcaacccatca 14452296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 8081079 - 8080939
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    |||||||||| || ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||| ||||||    
T  8081079 cactatagggtttataacaattaaaattttacatcaaattcaacccatcatatacgttcataaattttgtttcattccaaaacctagaacacaaataacg 8080980  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8080979 tgcaatttcttcttcattcttctttccatcttgattgttca 8080939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 43938390 - 43938529
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  43938390 cactatagggcttgtaa-aattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctaaaacacacataacg 43938488  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  43938489 tgcaatttcttgttcattcttcttcccatcttgattgttca 43938529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 26918319 - 26918459
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||| ||||||  ||||     
T  26918319 cactatatggcttgtaacaattaaaatttcacatcaaattcaactcatcatatacgcttataaattttgttccattccaaaacctataacacacgtaaca 26918418  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  26918419 tgcaatttcttcttcattcttcttctcatcttgattgttca 26918459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 31623365 - 31623503
Alignment:
Q  100 ctatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtg 199  Q
    ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||| ||    
T  31623365 ctataggacttgtaacaattaaaatttcacatcaaattcaacccatcatatacgtttataaattttgttccattccaaaacctagaacacacataacatg 31623464  T
Q  200 caatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||| ||||||||||||||| ||||||| ||||||||    
T  31623465 caattttttcttcattcttcttcccatcttaattgttca 31623503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 7111745 - 7111856
Alignment:
Q  101 tatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgc 200  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||    
T  7111745 tatagagcttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccattgcaaaacctataacacacataacgtgc 7111844  T
Q  201 aatttcttcttc 212  Q
    ||||||||||||    
T  7111845 aatttcttcttc 7111856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 30112857 - 30112993
Alignment:
Q  102 atagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgca 201  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |||||  ||||||||||    
T  30112857 atagggcttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgtgccattccaaaacctagaacacgcataacgtgca 30112956  T
Q  202 atttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||| |||||||| ||||| |||| |||| ||||||    
T  30112957 atttcctcttcatttttcttcccattttgactgttca 30112993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 232
Target Start/End: Complemental strand, 51943565 - 51943432
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||| |||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| ||| |||||| |||||     
T  51943565 cactataggtcttgaaacaattaaaatttcacatcaaattcaacacatcatatacgttcataaattttgttacattccaaaa-ctagaacacacataaca 51943467  T
Q  198 tgcaatttcttcttcattcttctttccatcttgat 232  Q
    |||||||||||||||||| ||||| ||||||||||    
T  51943466 tgcaatttcttcttcatttttcttcccatcttgat 51943432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 10657016 - 10657105
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  10657016 atacgttcataaattttgttccattccaaaacctagaacacacataacgtacaatttcttcttcattcttcttcccatcttgattgttca 10657105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 10871161 - 10871250
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  10871161 atacgttcataaattttgttccattccaaaacctagaacacacataacgtacaatttcttcttcattcttcttcccatcttgattgttca 10871250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 43939349 - 43939260
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||| ||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  43939349 atacgttcataaattttgttctattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 43939260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 50791690 - 50791601
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||||| | ||||||||||||||    
T  50791690 atacgttcataaattttgttccattctaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcctatcttgattgttca 50791601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 51942613 - 51942702
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||| ||||||||||| ||||||||| |||||| ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  51942613 atacgttcataaaatttgttccattccaaaacctagaacacacataacatgcaatttcttcttcattcttcttcccatcttgattgttca 51942702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 8079608 - 8079700
Alignment:
Q  146 catatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||| ||||||||||||||| |||| ||||||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||    
T  8079608 catatacattcataaattttgtttcattccaaaacctagaacacacataacgtgcaatttcttcttcatttttcttcccatcttgattgttca 8079700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 49647787 - 49647702
Alignment:
Q  153 gttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||| ||| ||||||||| |||||  |||||||||||||||||||||||||||||| ||||||||||||||||    
T  49647787 gttcataaattttgttcaattccaaaacctagaacacgcataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 49647702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 40846673 - 40846583
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaaca 188  Q
    |||||||| |||| ||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||  |||||||| ||||    
T  40846673 cactatagagcttgtaacaattaaaatttcacatcaaattcaacctatcatatacgtttataaattttgttccattcaaaaacctagaaca 40846583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 26919265 - 26919178
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgtt 236  Q
    ||||||||||||||||||||||| | ||||||||| |||| | |||||||||||||||||||||||| ||||| ||||||| ||||||    
T  26919265 atacgttcataaattttgttccactccaaaacctagaacaaacataacgtgcaatttcttcttcattattcttcccatctttattgtt 26919178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 49646901 - 49646984
Alignment:
Q  155 tcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||| ||| ||||||||| |||||| |||||||||||||||||||||||| ||||| |||||||| |||||||    
T  49646901 tcataaattttgttcaattccaaaacctagaacacacataacgtgcaatttcttcttcattattcttcccatcttggttgttca 49646984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 10657924 - 10657835
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||| |||||||||||||||||||| ||||||||| |||||| | ||| |||||||||||||||||||||||| ||||||  ||||||||    
T  10657924 atacattcataaattttgttccattccaaaacctagaacacacacaacttgcaatttcttcttcattcttcttcccatctacattgttca 10657835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 10872069 - 10871980
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||| |||||||||||||||||||| ||||||||| |||||| | ||| |||||||||||||||||||||||| ||||||  ||||||||    
T  10872069 atacattcataaattttgttccattccaaaacctagaacacacacaacttgcaatttcttcttcattcttcttcccatctacattgttca 10871980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 43594161 - 43594093
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttc 169  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  43594161 cactatagggcttgtaacaattaaaatttcacatcaaattcaac---ccatatacgttcataaattttgttc 43594093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 49645971 - 49646021
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  49645971 cactatatggcttttaacaattaaaatttcacatcaaattcaactcatcat 49646021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 10659036 - 10658986
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||||| || |||||||||||||||||||||||||||||| ||||||    
T  10659036 cactatagggtttgtaacaattaaaatttcacatcaaattcaacccatcat 10658986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 10873181 - 10873131
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||||| || |||||||||||||||||||||||||||||| ||||||    
T  10873181 cactatagggtttgtaacaattaaaatttcacatcaaattcaacccatcat 10873131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 24577789 - 24577739
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||||| || |||||||||||||||||||||||||||||| ||||||    
T  24577789 cactatagggtttgtaacaattaaaatttcacatcaaattcaacccatcat 24577739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 48952976 - 48953018
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaa 140  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  48952976 cactatagggcttgtaacaattaaaatttcacatcaaattcaa 48953018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 50790770 - 50790820
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||||||    
T  50790770 cactatagggcttgcaacaattaaaatttcacatcaaattcaacacatcat 50790820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 50792569 - 50792519
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||| ||||| |||||||||||||||||||||||||| ||||||||||    
T  50792569 cactatatggcttgtaacaattaaaatttcacatcaaattaaactcatcat 50792519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 47650716 - 47650663
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatata 151  Q
    ||||||||| ||| |||||||||||||||||||||||||| ||| |||||||||    
T  47650716 cactataggtcttgtaacaattaaaatttcacatcaaatttaacccatcatata 47650663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 31624548 - 31624501
Alignment:
Q  101 tatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||| ||| |||||||||||||||||||||||||||||| ||||||    
T  31624548 tataggacttgtaacaattaaaatttcacatcaaattcaacacatcat 31624501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 43590480 - 43590530
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||| ||||||    
T  43590480 cactataggacttgtaacaattaaaatttaacatcaaattcaacccatcat 43590530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 19871112 - 19871076
Alignment:
Q  112 taacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||||||||||||||||||||||||| ||||||    
T  19871112 taacaattaaaatttcacatcaaattcaacccatcat 19871076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 43590656 - 43590696
Alignment:
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  43590656 tgcaatttctttctcattcttctttccatcttgattgttca 43590696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 43940244 - 43940204
Alignment:
Q  108 cttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||||||||||||||||||||| ||||||| ||||||    
T  43940244 cttctaacaattaaaatttcacatcatattcaacccatcat 43940204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 51941063 - 51941099
Alignment:
Q  112 taacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||||||||||||||||||||| |||||||||    
T  51941063 taacaattaaaatttcacatcaaattctactcatcat 51941099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 38623491 - 38623448
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaac 141  Q
    ||||||| ||||| ||||||||||||||||||||||| ||||||    
T  38623491 cactataaggcttgtaacaattaaaatttcacatcaagttcaac 38623448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 19869906 - 19869948
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaa 140  Q
    |||||||||| || |||||| ||||||||||||||||||||||    
T  19869906 cactatagggtttgtaacaactaaaatttcacatcaaattcaa 19869948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 26923692 - 26923642
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||||||| ||| ||||||||||| | |||||||||||| ||||||    
T  26923692 cactatagggcttgtaagaattaaaattttatatcaaattcaacccatcat 26923642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 8525673 - 8525536
Alignment:
Q  101 tatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgc 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |  ||| |||||||||    
T  8525673 tatagggcttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccattccaaaacctagagtacacataacgtgc 8525574  T
Q  201 aatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||  |||||||||||||||    
T  8525573 aatttcttcttcattcttcttctcatcttgattgttca 8525536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 34858466 - 34858606
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||||||| ||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| |||| ||||||||| |||||| ||||||    
T  34858466 cactatagggcttgtaacaattaaaatttcacatcaaattccacccatcataaacgttcataaattttgtttcattccaaaacctagaacacacataacg 34858565  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  34858566 tgcaatttcttcttcattcttcttcccatcttgattgttca 34858606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 5100425 - 5100565
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||| |||| |    
T  5100425 cactataggtcttgtaacaattaaaatttcacatcaaattcaacgcatcatatacgttcataaattttgttacattccaaaacctagaacacacataatg 5100524  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  5100525 tgcaatttcttcttcatttttcttcccatcttgattgttca 5100565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 37250366 - 37250506
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||  ||||||    
T  37250366 cactatagggcttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaacacgcataacg 37250465  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||| |||||||| ||||| |||| |||||||||||    
T  37250466 tgcaatttcctcttcatttttcttcccattttgattgttca 37250506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 29639520 - 29639660
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||||||| ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| | ||||||||| ||||||  |||||    
T  29639520 cactatagggcttgtaacaattaaagtttcacatcaaattcaacccatcatatacattcataaattttgttccactccaaaacctagaacacatgtaacg 29639619  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  29639620 tgcaatttcttcttcattcttcttcccatcatgattgttca 29639660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 29640337 - 29640198
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    |||||||||| || |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||||| ||||||    
T  29640337 cactatagggtttgtaacaattaaaatttcacatcaaattcaacccatcatatatgttcataaattttgttccattccaaaacctagaacacacataacg 29640238  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||| || ||||| ||||||||||||||||    
T  29640237 tgcaatttcttcttc-ttattcttcccatcttgattgttca 29640198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 212
Target Start/End: Complemental strand, 3035793 - 3035679
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||||||| ||| || ||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| ||||||||| |||||| |||| |    
T  3035793 cactatagggcttgtaataactaaaatttcacatcaaattcaacacatcatatatgttcatacattttgttccattccaaaacctataacacatataatg 3035694  T
Q  198 tgcaatttcttcttc 212  Q
    |||||||||||||||    
T  3035693 tgcaatttcttcttc 3035679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 3034866 - 3034955
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  3034866 atacgttcataaattttattccattccaaaacctaaaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 3034955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 15525199 - 15525288
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  15525199 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 15525288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 5101319 - 5101230
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||| ||||||||||| ||||| ||| |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  5101319 atacgttcataaaatttgttccattccaaaatctagaacacacataatgtgcaatttcttcttcattcttcttcccatcttgattgttca 5101230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 15526111 - 15526024
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| ||||||||| |||| | |  |||||||||||||||||||||||||||| |||||||||||||||    
T  15526111 atacgttcataaattttgttccattccaaaacctagaacataca--acgtgcaatttcttcttcattcttcttttcatcttgattgttca 15526024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 8524723 - 8524812
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||| |||| ||||||||| |||||  ||||| ||||||||||||||||||||||||  |||||||| ||||||    
T  8524723 atacgttcataaattttgtttcattccaaaacctataacacgcataacttgcaatttcttcttcattcttcttctcatcttgactgttca 8524812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 29390847 - 29390730
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||       ||||||||||||||||||| | || |||||| |||| | |||||     
T  29390847 cactatagggcttgtaacaattaaaatttcacatcaaattcaacccat------ggttcataaattttgttccagtccataacctagaacagacataacc 29390754  T
Q  198 tgcaatttcttcttcattcttctt 221  Q
    || | |||||||||||||||||||    
T  29390753 tgtagtttcttcttcattcttctt 29390730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 34859440 - 34859376
Alignment:
Q  148 tatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttc 212  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||  ||||||||||||||||||||    
T  34859440 tatacgttcataaattttgttctattccaaaacctagaacacatgtaacgtgcaatttcttcttc 34859376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 29389171 - 29389219
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatc 146  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||    
T  29389171 cactatagggtttgtaacaattaaaatttcacatcaaattcaactcatc 29389219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 8520443 - 8520493
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||||||| ||||||||||||||| |||||||||||||| ||||||    
T  8520443 cactatagggcttgtaacaattaaaattttacatcaaattcaacccatcat 8520493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 37256262 - 37256212
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||||||||||    
T  37256262 cactatagggcttgtaacaattaaaatttgacatcaaactcaactcatcat 37256212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 37252582 - 37252535
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataac 196  Q
    ||||||||||||||||||||| ||||||||||||| |||||| |||||    
T  37252582 atacgttcataaattttgttcaatttcaaaacctagaacacacataac 37252535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 37251272 - 37251228
Alignment:
Q  192 ataacgtgcaatttcttcttcattcttctttccatcttgattgtt 236  Q
    ||||||||||| || ||||||||||||||| ||||||||||||||    
T  37251272 ataacgtgcaacttattcttcattcttcttcccatcttgattgtt 37251228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 6719689 - 6719726
Alignment:
Q  114 acaattaaaatttcacatcaaattcaactcatcatata 151  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  6719689 acaattaaaatttcacatcaaatttaacccatcatata 6719726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 69684 - 69816
Alignment:
Q  106 ggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaattt 205  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| ||||||||||||||    
T  69684 ggcttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaatttcgttccattccaaaacctagaacacacataacgtgcaattt 69783  T
Q  206 cttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||| ||||||||||| ||||    
T  69784 cttcttcattcttcttcccatcttgattattca 69816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 70749 - 70657
Alignment:
Q  146 catatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||| ||||||||||||||||  ||| ||||||| | |||||| |||||||| ||||||||||||||||||||| ||||||  ||||||||    
T  70749 catatatgttcataaattttgttttattccaaaaccaagaacacacataacgtgtaatttcttcttcattcttcttcccatctaaattgttca 70657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 71705 - 71655
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  71705 cactatagagcttgtaacaattaaaatttcacatcaaattcaacccatcat 71655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 31640303 - 31640443
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |||||| ||||||    
T  31640303 cactatagggcttgtaaaaattaaaatttcacatcaaattcaacccatcatatacgttcatatattttgttccattccaaaacctagaacacacataacg 31640402  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    || ||||||||||||||||||||| ||||||||||||||||    
T  31640403 tgtaatttcttcttcattcttcttcccatcttgattgttca 31640443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 41671364 - 41671224
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    |||||||||  || |||||||||||||||||||||||||||||  ||||||||| |||||||||||||||| |||| |||||||||||||||| ||||||    
T  41671364 cactataggttttgtaacaattaaaatttcacatcaaattcaatgcatcatataagttcataaattttgttacattccaaaacctaaaacacacataacg 41671265  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    || ||||||||||||||| ||||| ||||||||||||||||    
T  41671264 tgtaatttcttcttcatttttcttcccatcttgattgttca 41671224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 35021145 - 35021234
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35021145 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttctttccatcttgattgttca 35021234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 38362732 - 38362821
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  38362732 atacgttcataaattttgttgcatttcaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 38362821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 38363640 - 38363551
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| ||||||||| |||||| | |||||||||||||||||||||||||||| ||||||||||||||||    
T  38363640 atacgttcataaattttgttccattccaaaacctagaacacacacaacgtgcaatttcttcttcattcttcttcccatcttgattgttca 38363551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 26920418 - 26920323
Alignment:
Q  143 catcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||||||||    
T  26920418 catcaaatacgttcataaattttattccattccaaaacctaaaacacacataacatgcaatttcttcttcattcttcttcccatattgattgttca 26920323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 41670446 - 41670533
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgtt 236  Q
    ||||||||||||| ||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  41670446 atacgttcataaaatttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgtt 41670533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 35022053 - 35021964
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| ||||| ||| |||||| |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  35022053 atacgttcataaattttgttccattccaaaatctagaacacatataatgtgcaatttcttctttattcttctttccatcttgattgttca 35021964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 19142132 - 19142043
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||| ||| ||||||||| |||||| ||||| |||||||| ||||||||||||||| ||||||||||||||||    
T  19142132 atacgttcataaattttgttctattccaaaacctagaacacacataacatgcaatttattcttcattcttcttcccatcttgattgttca 19142043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 26951136 - 26951041
Alignment:
Q  143 catcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||| |||| |||||||||||| ||||||| ||||| ||| || ||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  26951136 catcaaatacattcataaattttattccattccaaaatctataatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 26951041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 26950253 - 26950315
Alignment:
Q  176 aaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||| |||||| ||||||||||| |||||||||||||||||| ||||||||||||||||    
T  26950253 aaaacctataacacacataacgtgcaaattcttcttcattcttcttcccatcttgattgttca 26950315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 31641265 - 31641182
Alignment:
Q  146 catatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||||| ||| |||| |||| ||||         ||||||||||||||||||||| |||||||||||||||||||    
T  31641265 catatacgttcataaattttgttcaattccaaaccctataaca---------tgcaatttcttcttcattcttttttccatcttgattgttca 31641182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 19143075 - 19143025
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||| ||||| |||||||||||||||||||||||||||||| ||||||    
T  19143075 cactatatggcttgtaacaattaaaatttcacatcaaattcaacacatcat 19143025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 35019433 - 35019483
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  35019433 cactatagtgcttgtaacaattaaaatttcacatcaaattcaacccatcat 35019483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 39069028 - 39069081
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatata 151  Q
    ||||||||| |||  ||||||||||||||||||||||||||||| |||||||||    
T  39069028 cactataggtcttgcaacaattaaaatttcacatcaaattcaacccatcatata 39069081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 23625855 - 23625906
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcata 149  Q
    |||||||||| || |||||||||||||||||||||||||||||  |||||||    
T  23625855 cactatagggtttgtaacaattaaaatttcacatcaaattcaatccatcata 23625906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 15825789 - 15825739
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||| | ||| |||||||||||||||||||||||||||||| ||||||    
T  15825789 cactatatgacttgtaacaattaaaatttcacatcaaattcaacccatcat 15825739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 26920449 - 26920411
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaat 136  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  26920449 cactatagggcttgtaacaattaaaatttcacatcaaat 26920411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 31642894 - 31642852
Alignment:
Q  106 ggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||| |||||||||||||||||||||||||||||| ||||||    
T  31642894 ggcttgtaacaattaaaatttcacatcaaattcaacccatcat 31642852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 43129536 - 43129586
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||| | ||| |||||||||||||||||||| ||||||||||||||||    
T  43129536 cactatatgacttgtaacaattaaaatttcacattaaattcaactcatcat 43129586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 5586993 - 5587029
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaa 134  Q
    ||||||||||||| |||||||||||||||||||||||    
T  5586993 cactatagggcttataacaattaaaatttcacatcaa 5587029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 5587215 - 5587250
Alignment:
Q  203 tttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||||| |||||||||||    
T  5587215 tttcttcttcattcttctttccattttgattgttca 5587250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 5587926 - 5587887
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaatt 137  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  5587926 cactatagggtttctaacaattaaaatttcacattaaatt 5587887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 29725690 - 29725737
Alignment:
Q  101 tatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||| |||| ||| ||||||||||| |||||||||||||||||||||    
T  29725690 tatagagcttgtaaaaattaaaattttacatcaaattcaactcatcat 29725737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 26951167 - 26951129
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaat 136  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  26951167 cactataggacttgtaacaattaaaatttcacatcaaat 26951129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 38364624 - 38364574
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||||| || ||| |||||||||||||||||||||| ||| ||||||    
T  38364624 cactatagggtttgtaataattaaaatttcacatcaaattaaacccatcat 38364574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 23260924 - 23260786
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||  |||||| ||||||    
T  23260924 cactatagggcttgtaacaattaaaatttcacatcaaattcaacgcatcatatatgttcataaattttgttccattccaaaacct--aacacacataacg 23260827  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    || ||||||||||||| ||||||| ||||||||||||||||    
T  23260826 tgtaatttcttcttcactcttcttcccatcttgattgttca 23260786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 23260104 - 23260196
Alignment:
Q  146 catatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||||||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  23260104 catatacgttcataaattttgttccattccaaaacctagaacacacataacatgcaatttcttcttcattcttctttccatcttgatttttca 23260196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 4639228 - 4639311
Alignment:
Q  155 tcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||| |||||||  |||||||| |||||| ||||| | |||||||||||||||||||||| ||||||||||||||||    
T  4639228 tcataaattttcttccattctaaaacctagaacacacataacatacaatttcttcttcattcttcttcccatcttgattgttca 4639311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 44110085 - 44110035
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  44110085 cactatagggcttgtaacaattaaaatttcacatcaaattcaacccatcat 44110035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 44300097 - 44300047
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  44300097 cactatatggcttgtaacaattaaaatttcacatcaaattcaactcatcat 44300047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 4638339 - 4638390
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcata 149  Q
    |||||||||| ||  |||||||||||||||||||||||||||||||||||||    
T  4638339 cactatagggtttgcaacaattaaaatttcacatcaaattcaactcatcata 4638390  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 4640246 - 4640196
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||| |||| |||||||||||||||||||||||||||||| ||||||    
T  4640246 cactatagagcttgtaacaattaaaatttcacatcaaattcaacccatcat 4640196  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 43847582 - 43847532
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||| |||||||| |||||||||||||||||||||||||||||| ||||||    
T  43847582 cactgtagggcttgtaacaattaaaatttcacatcaaattcaacccatcat 43847532  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 11757025 - 11756975
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||||| || |||||||||||||||||||||| ||||||| ||||||    
T  11757025 cactatagggtttgtaacaattaaaatttcacatcacattcaacccatcat 11756975  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 42159561 - 42159600
Alignment:
Q  101 tatagggcttctaacaattaaaatttcacatcaaattcaa 140  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  42159561 tatagggtttgtaacaattaaaatttcacatcaaattcaa 42159600  T

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Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 13869119 - 13868979
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacacagataacg 197  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |||||| |||||     
T  13869119 cactatagggcttataacaataaaaatttcacatcaaattcaactcaccatatacgctcataaattttgttccattccaaaacctagaacacacataaca 13869020  T
Q  198 tgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||||||||   |||||||||||||    
T  13869019 tgcaatttcttcttcattcttctttttgtcttgattgttca 13868979  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 13868184 - 13868273
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  13868184 atacgttcataaattttgttccattccaaaacctaaaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 13868273  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 24160173 - 24160266
Alignment:
Q  146 catatacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttcat 239  Q
    ||||||||||||||||||||||||| || ||||| ||| |||||| |||||||| ||||| |||||||||||||||  ||||||||||||||||    
T  24160173 catatacgttcataaattttgttcccttccaaaatctagaacacacataacgtgaaatttattcttcattcttcttctcatcttgattgttcat 24160266  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 15509070 - 15509159
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||| ||||||||||||||||| ||||||||| |||||| || || | |||||||||||||  ||||||| | ||||||||||||||    
T  15509070 atacgttaataaattttgttccattccaaaacctagaacacacatgacattcaatttcttcttcggtcttcttcctatcttgattgttca 15509159  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 12503660 - 12503712
Alignment:
Q  186 acacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  12503660 acacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 12503712  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 32561652 - 32561570
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    |||||||||||||||||||  |||| |||||||||||       ||||||||||||||||||||||||||||| | ||||||||||||||    
T  32561652 atacgttcataaattttgtgtcattccaaaacctaaa-------taacgtgcaatttcttcttcattcttcttccgatcttgattgttca 32561570  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 5090237 - 5090187
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  5090237 cactatagggcttgtaacaattaaaatttcacatcaaattcaacccatcat 5090187  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 24159187 - 24159234
Alignment:
Q  101 tatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||    
T  24159187 tatagggcttgtaacaattaaaattttacatcaaattcaactcatcat 24159234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 34574748 - 34574698
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  34574748 cactatagggcttgtaaaaattaaaatttcacatcaaattcaacccatcat 34574698  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 15508295 - 15508344
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatca 147  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||| |||||    
T  15508295 cactatatggcttgtaacaattaaaatttcacattaaattcaacccatca 15508344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 32560768 - 32560831
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttc 212  Q
    |||| ||||||| |||||||||||| ||||||||| | |||| ||||| | |||||||||||||    
T  32560768 atacattcataatttttgttccattccaaaacctagagcacacataacatacaatttcttcttc 32560831  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 13866210 - 13866260
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    |||||||| |||| ||||||||||||||| |||||||| ||||| ||||||    
T  13866210 cactatagcgcttgtaacaattaaaattttacatcaaactcaacccatcat 13866260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 32562564 - 32562522
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaa 140  Q
    ||||||| ||||| ||||||||||||||| |||||||||||||    
T  32562564 cactatatggcttataacaattaaaatttgacatcaaattcaa 32562522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 941 - 850
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccatttcaaaacctaaaacac 189  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||    
T  941 cactatagggcttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaacac 850  T

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Target: scaffold0217; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 20408 - 20319
Alignment:
Q  149 atacgttcataaattttgttccatttcaaaacctaaaacacagataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  20408 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 20319  T

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Target: scaffold0217; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 19541 - 19587
Alignment:
Q  192 ataacgtgcaatttcttcttcattcttctttccatcttgattgttca 238  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||||||    
T  19541 ataacgtgcaatttcctcttcatttttcttcccatcttgattgttca 19587  T

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Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 94557 - 94507
Alignment:
Q  98 cactatagggcttctaacaattaaaatttcacatcaaattcaactcatcat 148  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  94557 cactatagggcttgtaacaattaaaatttcacatcaaattcaacccatcat 94507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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