View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16570_high_2 (Length: 451)
Name: NF16570_high_2
Description: NF16570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16570_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 44260871 - 44260428
Alignment:
| Q |
1 |
catagaaaacttaaactcaagtcaatataaatgcaatttctctagacatagtcagaacaaaatacaaacaagaagctagtttcaaaccatcaaaacttgc |
100 |
Q |
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| T |
44260871 |
catagaaaacttaaactcaagtcaatataaatgcaatttctctagacatagtcagaacaaaatacaaacaagaagctagtttcaaaccatcaaaacttgc |
44260772 |
T |
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| Q |
101 |
accaccctcttctttttgagattcaaaagaaagatctttccaaacaaactcatcaggttgacaatcccagcacaaaacaccatcatccagttgatttatc |
200 |
Q |
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| T |
44260771 |
accaccctcttctttttgagattaaaaagaaagatctttccaaacaaactcatcaggttgacaatcccagcacaaaacaccatcatctagttgatt---c |
44260675 |
T |
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| Q |
201 |
aagtcattaagatcaacatgttgactaagttggtttgatgatgaattaggaggcaaatcaccaagacttgtgaaatccaccatctcacttgtataaccag |
300 |
Q |
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| T |
44260674 |
cagtcattaagattaacatgttgactaagttggtttgatgatgaattaggaggcaaatcaccaagacttgtgaaatccacaatctcacttgtataatcag |
44260575 |
T |
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| Q |
301 |
gattaactacttggtcattcatctccacaagcccattaagttggtttaatggtgaactaggaggaaaatcaccaagatcagaaaaatcaatcatctcaca |
400 |
Q |
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| T |
44260574 |
gattaactacttggtcattcatctccacaagcccattaagttggtttaatggtgaactaggaggaaaatcaccaagatcagaaaaatcaatcatctcaca |
44260475 |
T |
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| Q |
401 |
tatatccaaggtgttagtttcaatttgttgcatattcttcgacatgc |
447 |
Q |
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| T |
44260474 |
tatatccaaggtgttagtttcaatttgttgcatatttttcaacatgc |
44260428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 289
Target Start/End: Complemental strand, 15978473 - 15978278
Alignment:
| Q |
94 |
aacttgcaccaccctcttctttttgagattcaaaagaaagatctttccaaacaaactcatcaggttgacaatcccagcacaaaacaccatcatccagttg |
193 |
Q |
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| T |
15978473 |
aacttgcatcgcccttttcactttgagatgaaaaagaaagatctttccagaaaaactgatgaggctgactaacctgattcaaaacaccaccatctagttg |
15978374 |
T |
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| Q |
194 |
atttatcaagtcattaagatcaacatgttgactaagttggtttgatgatgaattaggaggcaaatcaccaagacttgtgaaatccaccatctcact |
289 |
Q |
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| T |
15978373 |
atttaaccaatcgtcagaatcatcaagttgactaagttgctttgtagatgaactaggatgcaaatcaccaagattagtgaaatcaatcatctcact |
15978278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 15978268 - 15978208
Alignment:
| Q |
227 |
aagttggtttgatgatgaattaggaggcaaatcaccaagacttgtgaaatccaccatctca |
287 |
Q |
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| T |
15978268 |
aagttggtttgttgatgaattatgaggcaaatcaacatgattagtcaaatccaccatctca |
15978208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 15978617 - 15978546
Alignment:
| Q |
115 |
tttgagattcaaaagaaagatctttccaaacaaactcatcaggttgacaatcccagcacaaaacaccatcat |
186 |
Q |
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| T |
15978617 |
tttgagatgaaaaagaaagatctttccatgcaaactgatcaggttgattagcccagttcaaaacaccatcat |
15978546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 16053556 - 16053615
Alignment:
| Q |
4 |
agaaaacttaaactcaagtcaatataaatgcaatttctctagacatagtcagaacaaaata |
64 |
Q |
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| T |
16053556 |
agaaaactttaaatctaatcaatattaatgcagtttctctagacatagtc-gaacaaaata |
16053615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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