View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16570_high_3 (Length: 435)
Name: NF16570_high_3
Description: NF16570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16570_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 43 - 415
Target Start/End: Original strand, 44260876 - 44261249
Alignment:
| Q |
43 |
tgttcatgtttagttggttaatttaagtttgtgtcaggtactcatttgatccatcaacagcacatataatttatgttctatagataggagtatattgtta |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44260876 |
tgttcatgtttagttggttaatttaagtttgtgtcaggtattcatttgatccatcaacagcacatataatttatgttctatagataggagtatattgtta |
44260975 |
T |
|
| Q |
143 |
gcaattgctctctaaggatgaaagaaaagtagataaaattatattataaacatgttccaaggctccatcatcgtaaagcattcttgtaaaagccacctcc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44260976 |
gcaattgctctctaaggatgaaagaaaagtagataaaattatattataaacatgttccaaggctccgtcatcgtaaagcattcttgtaaaagccacctcc |
44261075 |
T |
|
| Q |
243 |
agaaacaaaagagcgttattcgtcatagcaatcggcgaatctactgtcaccatttcttctcagacaatgatatgagctt-ccaaaagattgaagaaatat |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44261076 |
agaaacaaaagagcgttattcgtcatagcaatcggtgaatctactgtcaccatttcttctcagacaatgatatgagcttcccaaaagattgaagaaatat |
44261175 |
T |
|
| Q |
342 |
gtcaggttcctccctcaaaatttaagacaatacaatgttatgtgaagtgaaaattcaggtctattctagacaat |
415 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44261176 |
gttaggttcctccctcaaaatttaagacaatacaatgttatgtgaagtgaaaattcaggtctattctagacaat |
44261249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 278 - 408
Target Start/End: Original strand, 44265270 - 44265402
Alignment:
| Q |
278 |
cgaatctactgtcaccatttcttctcagacaatgatatgagcttccaaaagattgaagaaatatgtcaggttc--ctccctcaaaatttaagacaataca |
375 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||||| ||| |||||| ||| ||||||||| ||||||||||| |
|
|
| T |
44265270 |
cgaatctactgccaccatttcttctcagacaaagaaatgagctgccaaaagattgaagaaatgtgttaggttcctctctctcaaaattgaagacaataca |
44265369 |
T |
|
| Q |
376 |
atgttatgtgaagtgaaaattcaggtctattct |
408 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| |
|
|
| T |
44265370 |
gtgttatgtgaagtgaaaattcaagtctgttct |
44265402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 44265085 - 44265151
Alignment:
| Q |
93 |
ccatcaacagcacatataatttatgttctatagataggagtatattgttagcaattgctctctaaggatgaaa |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
44265085 |
ccatcaacagcacatataatttatgttctacaga------tatattgttagcaattgctatctaaggatgaaa |
44265151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University