View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16570_high_4 (Length: 366)
Name: NF16570_high_4
Description: NF16570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16570_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 41900992 - 41901322
Alignment:
| Q |
19 |
aaaatataagaagcataagttctaacccaatgccttgtcacgcttgtccactggatcatacggctcggtaaaaattgatgtattgggctgcaatttgagg |
118 |
Q |
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| T |
41900992 |
aaaatataagaagcataagttctaacccaatgccttgtcacacttgtccactggatcatacggctcggtaaaaattgatgtattgggctgcaatttgagg |
41901091 |
T |
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| Q |
119 |
tgattaaagctgttaacattaatttaaaa-acaatattagtaaaaacaagtgaactaccggattaagcaaggacttgtatggtttgtcatcaattagcaa |
217 |
Q |
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| T |
41901092 |
tgattaaagctgttaatattgatttaaaaaacaatattagtaaaaacaagtgaactaccggattaagcaaggacttgtatggtttgtcatcaattagcaa |
41901191 |
T |
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| Q |
218 |
ggtattggaagcagaatatggtcctcctttcttgacactgtgccacacttctttcagttccttgnnnnnnnggggcttcttgttgttttccaaggattta |
317 |
Q |
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| T |
41901192 |
ggtattggaagcagaatacggtcctcctttcttgacactgtgccacacttctttcagttccttgaaaaaaaggggcttctggttgttctccaaggattta |
41901291 |
T |
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| Q |
318 |
aaaccagaatctctacatttatcttgatcct |
348 |
Q |
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| T |
41901292 |
aaaccagaatctctacatttatcttgatcct |
41901322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 41895939 - 41896286
Alignment:
| Q |
18 |
taaaatataagaagcataagttctaacccaatgccttgtcacgcttgtccactggatcatacggctcggtaaaaat---tgatgtattgggctgcaattt |
114 |
Q |
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| T |
41895939 |
taaaatataagaagcataagttctaacccagtgccttgtcatccttgtcctcaggatcatatgacttaggaaaaataattgatgtattgggctgcaattt |
41896038 |
T |
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| Q |
115 |
gaggtgattaaagctgttaacatta-atttaaaaaca-------atattagta------aaaacaagtgaactaccggattaagcaaggacttgtatggt |
200 |
Q |
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| T |
41896039 |
gaggtgattaaagctgttaatatttgattcaaaaacagttttttatattaatataaagaaaaacaagtgaattaccggattaaggaaagacttgtatggt |
41896138 |
T |
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| Q |
201 |
ttgtcatcaattagcaaggtattggaagcagaatatggtcctcctttcttgacactgtgccacacttctttcagttccttgnnnnnnnggggcttcttgt |
300 |
Q |
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| T |
41896139 |
ttgtcatcgatcagcaacgtatttgaagcagaatacggtcctcctttcttgatagtgtcccacacttttttcagttctttgaaaaagagaggtttcttat |
41896238 |
T |
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| Q |
301 |
tgttttccaaggatttaaaaccagaatctctacatttatcttgatcct |
348 |
Q |
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| T |
41896239 |
tgttctccaaggatttaaaaccagaatctctacatttatgttgatcct |
41896286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 280
Target Start/End: Original strand, 41891125 - 41891246
Alignment:
| Q |
159 |
aaaaacaagtgaactaccggattaagcaaggacttgtatggtttgtcatcaattagcaaggtattggaagcagaatatggtcctcctttcttgacactgt |
258 |
Q |
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| T |
41891125 |
aaaaacatgtgcattaacggattaaggaaggacctgtatggtctggcatcaatcatcaaggtatttgaagcagaatatggacatcctttcttgacatcat |
41891224 |
T |
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| Q |
259 |
gccacacttctttcagttcctt |
280 |
Q |
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| T |
41891225 |
cccacacttcttttagttcctt |
41891246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 34454271 - 34454209
Alignment:
| Q |
191 |
cttgtatggtttgtcatcaattagcaaggtattggaagcagaatatggtcctcctttcttgac |
253 |
Q |
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| T |
34454271 |
cttgtatggtttgtcatcaatcatcaaagtattagaagcagaatatggacctcctttcttgac |
34454209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 41885112 - 41885185
Alignment:
| Q |
177 |
ggattaagcaaggacttgtatggtttgtcatcaattagcaaggtattggaagcagaatatggtcctcctttctt |
250 |
Q |
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| T |
41885112 |
ggattaatgaaggacttatatgctttgtcatcaatcatcaaagtattagaagcagaatatgggcctcttttctt |
41885185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 41829544 - 41829477
Alignment:
| Q |
186 |
aaggacttgtatggtttgtcatcaattagcaaggtattggaagcagaatatggtcctcctttcttgac |
253 |
Q |
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| T |
41829544 |
aaggacttatatgctttgtcatcaatcatcaaagtattagaaggagaatatgagcctcctttcttgac |
41829477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 41891019 - 41891064
Alignment:
| Q |
29 |
aagcataagttctaacccaatgccttgtcacgcttgtccactggat |
74 |
Q |
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| T |
41891019 |
aagcataagttctaacccagtgctttgtcacccttgtcctctggat |
41891064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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