View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16570_low_1 (Length: 937)
Name: NF16570_low_1
Description: NF16570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16570_low_1 |
 | |
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| [»] scaffold1572 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 796; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 796; E-Value: 0
Query Start/End: Original strand, 17 - 917
Target Start/End: Complemental strand, 21319379 - 21318475
Alignment:
| Q |
17 |
atatcagaagaacaaatacctccagcaattataaagagtcctatccaaaatctcagtagctataactgacaactttcaaattactctcccagctgcatgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21319379 |
atatcagaagaacaaatacctccagcaattataaagagtcctatccaaaatctcagtagctataactggcaactttcaaattactctcccagctgcatgg |
21319280 |
T |
|
| Q |
117 |
actgaagtagcaaaaacagtacacatcagaaaggtttatacagaaaaatgaagtgcaaaaatatcagaaatcacagtaagttataaacaccgtaagttat |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21319279 |
actgaagtagcaaaaacagtacacgtcagaaaggtttatatagaaaaatgaagtgcaaaaatatcagaaatcacagtaagttataaacaacgtaagttat |
21319180 |
T |
|
| Q |
217 |
aactaatagcagaaaaccaaggcaggcatttgggttcaagcaccattgggctatgtgattcgagaaatagatgagacaccgtttcttctcctccacaatc |
316 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
21319179 |
aactaatagcagaaaaccaagggaggcatttgggttcaagcaccattgggctatgtgattcaagaaatagatgagacaccgtttcttctcctccacaatt |
21319080 |
T |
|
| Q |
317 |
tccaacacagctaagcatcccttcactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21319079 |
tccaacacagctaagcatcccttcactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagat |
21318980 |
T |
|
| Q |
417 |
atctttgacgggatcgatttattccaagctcttgaccaagacggattacatg----tggcactcccaacattaaagccttgtaagcttccctggcgggat |
512 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21318979 |
atctttgacgggatcgatttattccaagctcttgaccaagacggattacatgtgtttggcactcccaacattaaagccttgtaagcttccctggcgggat |
21318880 |
T |
|
| Q |
513 |
agatacttgttaatactccacctgtccaaacccatttgtctttctctaaatcattaaattccaccatttctaatctctctttaactcttctcaagacctt |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21318879 |
agatacttgttaatactccacctgtccaaacccatttgtctttctctaaatcattaaattccaccatttctaatctctccttaactcttctcaagacctt |
21318780 |
T |
|
| Q |
613 |
ttcctcatcatttaagctccctataacacccacctactctcaatttagatataagattgatgaaagagtttccctatttcatagctgaatcaaaaacatt |
712 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
21318779 |
ttcctcatcatttaagctccctataacacccacctactctcaatttagatataagattgatgacagagtttccctatttcatagctgaatcaaaaacatt |
21318680 |
T |
|
| Q |
713 |
caagatttatctaacaaaagcaagtagattgattcactttgttaattctgaacaaacacatagtggatcaaaacatcgttacaagagcataataggttat |
812 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||| | |||||||||||||||||| | ||||| |||||| |||||||||||||||||||||| |
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|
| T |
21318679 |
caagatttatcttacaaaagcaagtagattgattcgcttcctgaattctgaacaaacacatgattgatcagaacatcattacaagagcataataggttat |
21318580 |
T |
|
| Q |
813 |
gattcaaaacatataattacaaaaagaaatcaaaatgagcaaaaccttaacagagcaagacctttggaataaagccttgagaatgcacagaagttgaata |
912 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21318579 |
gattcaaaacatataattacaaaaagaaatcaaaatgaaccaaaccttaacagaacaagacctatggaataaagccttgagaatgcacagaagttgaata |
21318480 |
T |
|
| Q |
913 |
tccat |
917 |
Q |
| |
|
||||| |
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|
| T |
21318479 |
tccat |
21318475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 664 - 737
Target Start/End: Complemental strand, 3854761 - 3854688
Alignment:
| Q |
664 |
taagattgatgaaagagtttccctatttcatagctgaatcaaaaacattcaagatttatctaacaaaagcaagt |
737 |
Q |
| |
|
||||| |||||| | | ||||||||||||| || |||||| |||||||||||| ||||||| |||||||||||| |
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|
| T |
3854761 |
taagactgatgacaaaatttccctatttcacagttgaatccaaaacattcaagttttatcttacaaaagcaagt |
3854688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 742
Target Start/End: Original strand, 3915012 - 3915061
Alignment:
| Q |
693 |
atagctgaatcaaaaacattcaagatttatctaacaaaagcaagtagatt |
742 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||| ||||||||||||||||| |
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| T |
3915012 |
atagatgaatcaaaaacattaaagttttatctcacaaaagcaagtagatt |
3915061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: scaffold1572
Description:
Target: scaffold1572; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 537 - 885
Target Start/End: Original strand, 1264 - 1632
Alignment:
| Q |
537 |
tccaaacccatttgtctttctctaaatcattaaattccaccatttctaa-tctctctttaactcttctcaaga-------ccttttcct----catcatt |
624 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| |
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|
| T |
1264 |
tccaaacccatttgcattcctctaaatcattaaattccaccatttctaaatctctctttaactcttctcaagagtcgagaccttttccttcttcatcatt |
1363 |
T |
|
| Q |
625 |
taagctccctat--------aacacccacctactctcaatttagatataagattgatgaaagagtttccctatttcatagctgaatcaaaaacattcaag |
716 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1364 |
taagctccctgttcaaacttaacacccacctactcgcaatttagacataagattgatgaccaagtttccctatttcatagctgaatcaaaaacattcaag |
1463 |
T |
|
| Q |
717 |
atttatctaacaaaagcaagtagattgattcactttgttaattctgaacaaacacatagtggatcaaaacatcgttacaagagcataataggttatgatt |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
1464 |
atttatctaacaaaagcaagtagattgattcactttgttaattctgaacaaacacatagtggatcagaacatcgttacaagagcataataggttatgatt |
1563 |
T |
|
| Q |
817 |
caaaacatataattacaaaaagaaatcaaaatgagcaaaaccttaacagagcaagacctttggaataaa |
885 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||| ||||||||| |
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|
| T |
1564 |
caaaacatataattacaaaaagaaatcaaaatgaaccaaaccttaacagaacaagacctatggaataaa |
1632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 219 - 443
Target Start/End: Original strand, 1044 - 1268
Alignment:
| Q |
219 |
ctaatagcagaaaaccaaggcaggcatttgggttcaagcaccattgggctatgtgattcgagaaatagatgagacaccgtttcttctcctccacaatctc |
318 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||||||| ||||||||||||| ||||| | || | |||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
1044 |
ctaacagcagaaaaccaaggcaagcacttgggtttaagcaccattgggttatgtaactcaaaaaattgatgagacaccgttttttctcctccacaatctc |
1143 |
T |
|
| Q |
319 |
caacacagctaagcatcccttcactaatcactcctctcctatacaaattgtcttttgtagctatcctaatttaaagcattctccataccaacatagatat |
418 |
Q |
| |
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|||||||| |||||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
1144 |
caacacagttaagcatctcttgactaatcactcctctaatatacaaatcatcttttgtagctatcctaatttgaagcattctccataccaacatagatat |
1243 |
T |
|
| Q |
419 |
ctttgacgggatcgatttattccaa |
443 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
1244 |
ctttgacgggatcgatttattccaa |
1268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1572; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 32 - 190
Target Start/End: Original strand, 844 - 998
Alignment:
| Q |
32 |
atacctccagcaattataaagagtcctatccaaaatctcagtagctataactgacaactttcaaattactctcccagctgcatggactgaagtagcaaaa |
131 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||||| ||||||||||||||||| |
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|
| T |
844 |
atacctccagcaat-atgaagagtcctatccaaaatctcagtagctataactaacaactttcaaattactcccacaactgcacggactgaagtagcaaaa |
942 |
T |
|
| Q |
132 |
acagtacacatcagaaaggtttatacagaaaaatgaagtgcaaaaatatcagaaatcac |
190 |
Q |
| |
|
|||||| || |||||| ||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
943 |
acagtatacgctagaaagatttatacagaaaagt---ttgcaaaaatatcagaaatcac |
998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 37963959 - 37963803
Alignment:
| Q |
25 |
agaacaaatacctccagcaattataaagagtcctatccaaaatctcagtagctataactgacaactttcaaattactctcccagctgcatggactgaagt |
124 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |||||||||||||||| |
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|
| T |
37963959 |
agaacaattacctccagcaattata--gagtcctatccaaaatctcagaagctataa-tgacaactttcaaattactcccccaactgcatggactgaagt |
37963863 |
T |
|
| Q |
125 |
agcaaaaacagtacacatcagaaaggtttatacagaaaaatgaagtgcaaaaatatcagaaatcac |
190 |
Q |
| |
|
||||||| ||||| ||| || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37963862 |
agcaaaa----tacacgccag--agatttatacagaaaaatgaagtgcaaaaatatcagaaatcac |
37963803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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