View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16570_low_10 (Length: 269)
Name: NF16570_low_10
Description: NF16570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16570_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 31754168 - 31754401
Alignment:
| Q |
22 |
attcaactataattgaactcaaaataagtttgaaattaatatagaaatacaaattttgaataaaaaggaacaatatttagcatgagtactacatgaaatc |
121 |
Q |
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| T |
31754168 |
attcaactataattgaactcaaaataagtttgaaattaatatagaaatacaaattttgaataaaaaggaacaatatttagcatgagtactacatgaaatc |
31754267 |
T |
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| Q |
122 |
cacttgtaagggctagaggtgcaaaaatcagaaacctaatttatttttctggcgacaattcaactttcttttcaataatatgcgttgtccgaattatgat |
221 |
Q |
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| T |
31754268 |
cacttgtaagggctagaagtgcaaaaatcagaaacctaatttatttttccggcgacaattcaactttcttttcaataatatgcgttgtcaaaattgtgat |
31754367 |
T |
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| Q |
222 |
gcacaaaaacaagagaacaatgaatctgtctgtg |
255 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
31754368 |
gcacaaaaacaagagaacaatgaatctgtctgtg |
31754401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 31761616 - 31761672
Alignment:
| Q |
29 |
tataattgaactcaaaataagtttgaaattaatatagaaatacaaattttgaataaa |
85 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31761616 |
tataatttaactcataataagtttgaaattaatatagaaatataaattttgaataaa |
31761672 |
T |
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