View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16570_low_13 (Length: 220)

Name: NF16570_low_13
Description: NF16570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16570_low_13
NF16570_low_13
[»] chr8 (8 HSPs)
chr8 (1-203)||(1350485-1350687)
chr8 (91-203)||(1361149-1361261)
chr8 (131-203)||(1344085-1344157)
chr8 (131-203)||(1355430-1355502)
chr8 (5-46)||(1344031-1344072)
chr8 (5-46)||(1355515-1355556)
chr8 (75-119)||(1344023-1344067)
chr8 (75-119)||(1355520-1355564)
[»] chr3 (2 HSPs)
chr3 (75-119)||(24618411-24618455)
chr3 (131-203)||(24618473-24618545)
[»] chr2 (1 HSPs)
chr2 (137-192)||(43364441-43364496)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 1350485 - 1350687
Alignment:
Q  1 agaggatcatgtggttgagtttgatgataagattgatcaggccttaacggcaaaaattgacaagcaagtggagaaagaagatgatcctagggttgagttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1350485 agaggatcatgtggttgagtttgatgataagattgatcaggccttaacggcaaaaattgacaagcaagtggagaaagaagatgatcctagggttgagttt 1350584  T
Q  101 gatgatgagattgatcaggacccgatgaccgacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactctta 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1350585 gatgatgagattgatcaggacccaatgaccgacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactctta 1350684  T
Q  201 gag 203  Q
    |||    
T  1350685 gag 1350687  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 91 - 203
Target Start/End: Original strand, 1361149 - 1361261
Alignment:
Q  91 ggttgagtttgatgatgagattgatcaggacccgatgaccgacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaa 190  Q
    ||||||||||||||||||||||||||| |||   ||||| |||| ||||||||||||||||||||||||||||||||| |||   |||||||||||||||    
T  1361149 ggttgagtttgatgatgagattgatcatgacttaatgactgacaaagaagtggaagaatttgcgcgcagattaaattgtactcgcgaagagagaataaaa 1361248  T
Q  191 gaaactcttagag 203  Q
    |||| ||||||||    
T  1361249 gaaattcttagag 1361261  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 1344085 - 1344157
Alignment:
Q  131 gacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactcttagag 203  Q
    ||||| ||||| ||||||||||| ||||||||||||||  ||| ||||||||||| |||||||| ||||||||    
T  1344085 gacagggaagtcgaagaatttgcacgcagattaaattgttcttgggaagagagaaaaaaagaaattcttagag 1344157  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 1355502 - 1355430
Alignment:
Q  131 gacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactcttagag 203  Q
    ||||| ||||| ||||||||||| ||||||||||||||  ||| ||||||||||| |||||||| ||||||||    
T  1355502 gacagggaagtcgaagaatttgcacgcagattaaattgttcttgggaagagagaaaaaaagaaattcttagag 1355430  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 1344031 - 1344072
Alignment:
Q  5 gatcatgtggttgagtttgatgataagattgatcaggcctta 46  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  1344031 gatcttgtggttgagtttgatgatgagattgatcaggcctta 1344072  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 1355556 - 1355515
Alignment:
Q  5 gatcatgtggttgagtttgatgataagattgatcaggcctta 46  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  1355556 gatcttgtggttgagtttgatgatgagattgatcaggcctta 1355515  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 1344023 - 1344067
Alignment:
Q  75 aagaagatgatcctagggttgagtttgatgatgagattgatcagg 119  Q
    |||||||||||| |  |||||||||||||||||||||||||||||    
T  1344023 aagaagatgatcttgtggttgagtttgatgatgagattgatcagg 1344067  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 1355564 - 1355520
Alignment:
Q  75 aagaagatgatcctagggttgagtttgatgatgagattgatcagg 119  Q
    |||||||||||| |  |||||||||||||||||||||||||||||    
T  1355564 aagaagatgatcttgtggttgagtttgatgatgagattgatcagg 1355520  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 24618411 - 24618455
Alignment:
Q  75 aagaagatgatcctagggttgagtttgatgatgagattgatcagg 119  Q
    ||||||||||||||  |||||||||| ||||||||||||||||||    
T  24618411 aagaagatgatcctgtggttgagtttaatgatgagattgatcagg 24618455  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 24618473 - 24618545
Alignment:
Q  131 gacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactcttagag 203  Q
    ||||| ||||||||||||||||| ||||||||||| ||  ||| ||||||||| | || ||||| ||||||||    
T  24618473 gacagggaagtggaagaatttgcacgcagattaaactgtgcttgggaagagaggaaaatagaaattcttagag 24618545  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 43364496 - 43364441
Alignment:
Q  137 gaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaaga 192  Q
    ||||||||||||||||| ||||||||||||||  | ||| ||||||||||| ||||    
T  43364496 gaagtggaagaatttgcccgcagattaaattgttccttgcaagagagaatacaaga 43364441  T

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