View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16570_low_2 (Length: 531)
Name: NF16570_low_2
Description: NF16570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16570_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Complemental strand, 52271673 - 52271160
Alignment:
| Q |
18 |
aaaagcgtgaccaactccatcagcaatggcttgagcagcaggatacaactgggatggataatctactccagaaacttaattgtggttcaagattgaaaga |
117 |
Q |
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| T |
52271673 |
aaaagcgtgaccaactccatcagcaatggcttgagcagcaggatacaactgggatggataatctactccagaaacttaattgtggttcaagattgaaaga |
52271574 |
T |
|
| Q |
118 |
ttctaacgatgaagttgacgaggaagatgaggaaagcaaagaaactgaaaatgaatctgacgatgaagttgaagacttcactgctccatctgatgctgtg |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52271573 |
ttctgacgatgaagttgacgaggaagatgaggaaagcaaagaaactgaaaatgaatctgacgatgaagttgaagacttcgctgctccatctgatgctgtg |
52271474 |
T |
|
| Q |
218 |
aggatgaatctgaagaaggcgaagcagatgatcccacagatgtttacggataaagatgatgcatatgtatcatctgatgaggaaactgaggagaggctag |
317 |
Q |
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| T |
52271473 |
aggatcaatctgaagaaggcgaagcagatgatcccgcagatgtttacggataaagatgatgcatatgtatcatctgatgaggaaactgaggagaggctag |
52271374 |
T |
|
| Q |
318 |
ccaaacagtccctctcttatagagttgtgagttcttgcttctcagct------actatagtaaatgtattgctgtcactttgattttggcagaagtttat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52271373 |
ccaaacagtccctctcttatagagttgtgagttcttgcttctcagctactaatactatagtaaatgtattgctgtcactttgattttggcagaagtttat |
52271274 |
T |
|
| Q |
412 |
tgcatttccatctttgcctgcgctaaggtactcatgtgatgaaatgatgattatttttgtttttatatcaaaattgtaatgtgtaacaggagaagaacgc |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52271273 |
tgcatttccatctttgcctgcgctaaggtactcatgtgatgaaatgatgattatttttgtttttatatcaaaattgtaatgtgtaacaggagaagaacgc |
52271174 |
T |
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| Q |
512 |
tcaattcttttcac |
525 |
Q |
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| T |
52271173 |
tcaattcttttcac |
52271160 |
T |
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