View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16570_low_6 (Length: 423)
Name: NF16570_low_6
Description: NF16570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16570_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 124 - 405
Target Start/End: Original strand, 32597333 - 32597606
Alignment:
| Q |
124 |
tctagcaaaatcaagat--gttccccccactatgttttgaacgatccgctgagtacatatattattagtattggagtaaacaaacattttggtccttaaa |
221 |
Q |
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| T |
32597333 |
tctaccaaaatcaagatatgttccccccactatgttttgaacgatccgctgagtacatatattattagtattggagtaaacaaccattttggtccttaaa |
32597432 |
T |
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| Q |
222 |
tttgtgagacaatgtcattatgtataaaaaatgccaacaaataaaacccctgatttgcgttgattttacattgctaattaaaagaagaagatattagagc |
321 |
Q |
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| T |
32597433 |
tttgtgagacaatgtcattatgtataaaaaatgccaacaaataaaacccc----------cgattttacattgctaattaaaagaagaagatattagagc |
32597522 |
T |
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| Q |
322 |
ttataaggaaatgcaaatgtgggaatctgcaaatcatgactcaaacgtgtagctatttagcaattattttggtcagtatctaag |
405 |
Q |
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| T |
32597523 |
ttataaggaaatgcaaatgtgggaatctgcatatcatgactcaaacgtgtagctatttagcaattattttggtcagtatctaag |
32597606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 32597168 - 32597297
Alignment:
| Q |
1 |
tctatagtgaaatcattgctatgt-------tgggtccgtcttttctgcggttaatttggtttttgtgaggctttgttgcaattctgcaagtataaaaca |
93 |
Q |
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| T |
32597168 |
tctatagtgaaatcattgctatgtggttgtttgggtccgtcttttctgcggttaatttggtttttgtgaggctttgttgcaattctgcaagtataaaaca |
32597267 |
T |
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| Q |
94 |
agcaggaatactatcatttttgctgccagc |
123 |
Q |
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| T |
32597268 |
agcaggaatactatcatttttgctgccagc |
32597297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 184 - 307
Target Start/End: Original strand, 32577320 - 32577449
Alignment:
| Q |
184 |
tattagtattggagtaaacaaacattttggtccttaaatttgtgagacaat----gtcatt--atgtataaaaaatgccaacaaataaaacccctgattt |
277 |
Q |
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| T |
32577320 |
tattagtattggattaaacaaccattttggtccttaaatgtgtgaggtcattctagttattgaatgtataaaaaattccaacaaataaaacacctgatca |
32577419 |
T |
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| Q |
278 |
gcgttgattttacattgctaattaaaagaa |
307 |
Q |
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| T |
32577420 |
gcattgattttacattgctaattaaaagaa |
32577449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 32613843 - 32613893
Alignment:
| Q |
241 |
atgtataaaaaatgccaacaaataaaacccctgatttgcgttgattttaca |
291 |
Q |
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| T |
32613843 |
atgtataaaaaattccaaaaaataaaacctctgatctgcattgattttaca |
32613893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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