View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16570_low_7 (Length: 407)
Name: NF16570_low_7
Description: NF16570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16570_low_7 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 10 - 391
Target Start/End: Original strand, 30598939 - 30599318
Alignment:
| Q |
10 |
agatgaacaaataaaaggaaaaaagaagaatacaatgatggataaagctgtttcattttaataagtgattacataagnnnnnnngggtgcaatgatacac |
109 |
Q |
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| T |
30598939 |
agatgaacaaataaaaggaaaaaagaaaaatacaatgatggataaagctgtttcattttaataagtgattacataagtttttt-gggcgcaatgatacac |
30599037 |
T |
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| Q |
110 |
caccatgcaaagtaaaaacatagtaaagatgttggattacatttgagtatcaaagactgaaaatgaacactgctcccttcatatgacggctacaaggagc |
209 |
Q |
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| T |
30599038 |
caccatgcaaagtaaaaacatagtaaagatgttggattacatttgagtatcaaagactgaaaatgaacactgctcccttcatatgacggctacaaggagc |
30599137 |
T |
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| Q |
210 |
gtgaagatatatatgcattcaaatctgttatgcaaaagaggatggaggtcctacaacatagttggtctcacaatgcatgcgcatcaaaaacttgtcgcct |
309 |
Q |
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| T |
30599138 |
gtgaagatatatatgcattcaaatctgttatgcaaaagaggatggaggttctacaacatagttggtctcacaatg-atgcgcatcagaaacttgtcacct |
30599236 |
T |
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| Q |
310 |
agtttaaaggctagtggggctatacagagggataccccaacatggaatgttgtgtgtgatatccttagggaggctagtagtg |
391 |
Q |
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| T |
30599237 |
agtttaaaggctagtggggctatacagagggataccccaacatggaatgttgtgtgtgatatccttagggaggctagtagtg |
30599318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 2411214 - 2411352
Alignment:
| Q |
10 |
agatgaacaaataaaaggaaaaaagaagaatacaatgatggataaagctgtttcattttaataagtgattacataagnnnnnnngggtgcaatgatacac |
109 |
Q |
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| T |
2411214 |
agatgaacaaagaaaaagaataaagacgaatgcaaagatggatgaagctatttcattttaataagtgattacataag-ttttttgggtgctatgata--- |
2411309 |
T |
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| Q |
110 |
caccatgcaaagtaaaaacatagtaaagatgttggattacattt |
153 |
Q |
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| T |
2411310 |
caccatgtagtgt-aaaacatagtaaagatgttggattacattt |
2411352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 2411380 - 2411416
Alignment:
| Q |
156 |
gtatcaaagactgaaaatgaacactgctcccttcata |
192 |
Q |
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| T |
2411380 |
gtatcaaagactgaaaaagaacactgctcccttcata |
2411416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 13595 - 13668
Alignment:
| Q |
10 |
agatgaacaaataaaaggaaaaaagaagaatacaatgatggataaagctgtttcattttaataagtgattacat |
83 |
Q |
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| T |
13595 |
agatgaacaaaagaaaaaagaaaaaaaaaatgcaaagatggatgaagttgtttcattttaataagtgattacat |
13668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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