View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_high_12 (Length: 315)
Name: NF16571_high_12
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_high_12 |
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| [»] scaffold0008 (6 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 69502 - 69804
Alignment:
| Q |
1 |
cttattgatgagtataagaatacaaactttattcatggcaaggaaaatcagcataagacaacaaatgaaattaagaaacttaaagattaagagggcatat |
100 |
Q |
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| T |
69502 |
cttattgatgagtataagaatacaaactttattcatggcaaggaaaatcagcataggacaacaaatgaaattaagaaacttaaagattaagagggcatat |
69601 |
T |
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| Q |
101 |
gaagaaggggggatgatcaaattgagcgtattcttacaagttattctttcagaccaagtgcaattaaacatgtgtgtgagatagtgaaagggaatcgttt |
200 |
Q |
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| T |
69602 |
ggagaaggggggatgatcaaattgagtgtattcttacaagttattctttcagaccaagtgcaattaaacatgtgtgtgaggtagtgaaagggaatcgttt |
69701 |
T |
|
| Q |
201 |
cactaaccaagaagtagaagacgtaatttttcaaatgcaccatttaaagtcctcaggaccagatgggttactagccttattttaccaaaagtattggcat |
300 |
Q |
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| T |
69702 |
cactaaccaagaagtagaagacgtaatttttcaaatgcaccatttaaagtcctcaggaccagatgggttactagccttattttaccaaaagtattggcat |
69801 |
T |
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| Q |
301 |
ttt |
303 |
Q |
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||| |
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| T |
69802 |
ttt |
69804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 77345 - 77647
Alignment:
| Q |
1 |
cttattgatgagtataagaatacaaactttattcatggcaaggaaaatcagcataagacaacaaatgaaattaagaaacttaaagattaagagggcatat |
100 |
Q |
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| T |
77345 |
cttattgatgagtataagaatacaaactttattcatggcaaggaaaatcagcataggacaacaaatgaaattaagaaacttaaagattaagagggcatat |
77444 |
T |
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| Q |
101 |
gaagaaggggggatgatcaaattgagcgtattcttacaagttattctttcagaccaagtgcaattaaacatgtgtgtgagatagtgaaagggaatcgttt |
200 |
Q |
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| T |
77445 |
ggagaaggggggatgatcaaattgagtgtattcttacaagttattctttcagaccaagtgcaattaaacatgtgtgtgaggtagtgaaagggaatcgttt |
77544 |
T |
|
| Q |
201 |
cactaaccaagaagtagaagacgtaatttttcaaatgcaccatttaaagtcctcaggaccagatgggttactagccttattttaccaaaagtattggcat |
300 |
Q |
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| T |
77545 |
cactaaccaagaagtagaagacgtaatttttcaaatgcaccatttaaagtcctcaggaccagatgggttactagccttattttaccaaaagtattggcat |
77644 |
T |
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| Q |
301 |
ttt |
303 |
Q |
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||| |
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| T |
77645 |
ttt |
77647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 300
Target Start/End: Original strand, 70219 - 70322
Alignment:
| Q |
197 |
gtttcactaaccaagaagtagaagacgtaatttttcaaatgcaccatttaaagtcctcaggaccagatgggttactagccttattttaccaaaagtattg |
296 |
Q |
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| T |
70219 |
gtttcaataaccaatcattagaataagtaattttccagatgcaccctttaaagttcccaggactagatgggtaaccatccgtattttaacaaaagtattg |
70318 |
T |
|
| Q |
297 |
gcat |
300 |
Q |
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|||| |
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| T |
70319 |
gcat |
70322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 300
Target Start/End: Original strand, 78062 - 78165
Alignment:
| Q |
197 |
gtttcactaaccaagaagtagaagacgtaatttttcaaatgcaccatttaaagtcctcaggaccagatgggttactagccttattttaccaaaagtattg |
296 |
Q |
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|||||| ||||||| | ||||| | |||||||| || ||||||| |||||||| | |||||| |||||||| || | || ||||||| ||||||||||| |
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| T |
78062 |
gtttcaataaccaatcattagaataagtaattttccagatgcaccctttaaagttcccaggactagatgggtaaccatccgtattttaacaaaagtattg |
78161 |
T |
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| Q |
297 |
gcat |
300 |
Q |
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|||| |
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| T |
78162 |
gcat |
78165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 70140 - 70183
Alignment:
| Q |
151 |
agaccaagtgcaattaaacatgtgtgtgagatagtgaaagggaa |
194 |
Q |
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| T |
70140 |
agaccaagtgcaattgaagatgtgtgtgaggtagtgaaagggaa |
70183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 77983 - 78026
Alignment:
| Q |
151 |
agaccaagtgcaattaaacatgtgtgtgagatagtgaaagggaa |
194 |
Q |
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| T |
77983 |
agaccaagtgcaattgaagatgtgtgtgaggtagtgaaagggaa |
78026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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