View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_high_22 (Length: 246)
Name: NF16571_high_22
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_high_22 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 9538220 - 9538448
Alignment:
| Q |
18 |
tgtagaaagcatagttggacctttatatgtaacaaaattactcttctttataatccaaacatttcctacttgaccaaaaacaggttcattagtcacataa |
117 |
Q |
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| T |
9538220 |
tgtagaaagcatagttggacctttatatgtaacaaaattactcttctttataatccaaacatttcccacttgaccaaaaacaggttcattactcacataa |
9538319 |
T |
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| Q |
118 |
tcaatcacatctctatgatctttctttggagcaccatgatccatatgaatcaaataataattccctggatggtacaaagcctttaacaaccttttgattt |
217 |
Q |
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| T |
9538320 |
tcaatcacatctctatgatctttctttggtgcaccatgatccatatgaatcaaataataattccctggatggtacaaagcctttaacaaccttttgattt |
9538419 |
T |
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| Q |
218 |
tgatagcatctccttttgaacctgaaatt |
246 |
Q |
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| T |
9538420 |
tgatagcatctccttttgaacctgaaatt |
9538448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 33717729 - 33717586
Alignment:
| Q |
24 |
aagcatagttggacctttatatgtaacaaaattactcttctttataatccaaacatttcctacttgaccaaaaacaggttcattagtcacataatcaatc |
123 |
Q |
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|||||||||||| ||| |||| || || |||||| |||| | |||||||||||| || ||||||| ||||||||| ||||||| |||||| || | |
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| T |
33717729 |
aagcatagttggtcctctataagttaccaaattaggcttcccaacaatccaaacattcccaacttgactaaaaacaggatcattagccacatattctgcc |
33717630 |
T |
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| Q |
124 |
acatctctatgatctttctttggagcaccatgatccatatgaat |
167 |
Q |
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| T |
33717629 |
acatctttatgttctgcatctggagcaccataatccatgtgaat |
33717586 |
T |
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