View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16571_high_4 (Length: 482)
Name: NF16571_high_4
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 29 - 468
Target Start/End: Complemental strand, 3863831 - 3863392
Alignment:
| Q |
29 |
aaccacactcaagagaggtattaaatattgaagtagtatatgtcaattctatgatgtgcaaataaaataaatcctacatcatacacaaattaacttctac |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
3863831 |
aaccacactcaagagaggtattaaatattgaagtagtatatgtcaattctatgatgtgcaaataagataaatcctgcatcatacacaaattaacttctac |
3863732 |
T |
|
| Q |
129 |
tattggataagtagtaaatcacactatttgattgaacgagatatgataaacttattgatcaaataattaaaaacacagttgttcatagactccttaatat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3863731 |
tattggataagtagtaaatcacactatttgattgaacgagatatgataaacttattgatcaaataattaaaaacacagttgttcatagactccttaatat |
3863632 |
T |
|
| Q |
229 |
gtgatggtgcctccaacaaaaggccacataaatcataaactaatattgccaaataagaagctattgcagattccattatttctttcaatcgcaatttcta |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3863631 |
gtgatggtgcctccaacaaaaggccacataaatcataaactaatattgccaaataagaagctattgcagattccattatttctttccatcgcaatttcta |
3863532 |
T |
|
| Q |
329 |
taataagcatgcaacaataccgtgttggtgctggtttacatgtatttgtgataacaatcatgagctggtatgattcggagttcggactgatgggacatat |
428 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3863531 |
aaataagcatgcaacactaccgtgttggtgctggtttacatgtatttgtgataacaatcatgagctggtatgattcggagttcggacagatgggacatat |
3863432 |
T |
|
| Q |
429 |
ccggaagtacaaagcaagtgatgtgtatagagttgaaagt |
468 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3863431 |
ccggaagcacaaagcaagtgatgtgtatagagttgaaagt |
3863392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University